Detailed information of deep learning profile BP000266.1

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This page shows detailed deep learning-derived predictions and motifs for CTCF in middle frontal area 46 using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: CTCF
Model ID: BP000266.1
Cell line/tissue: middle frontal area 46
Class: C2H2 zinc finger factors
Family: More than 3 adjacent zinc fingers
JASPAR ID: MA0139.2
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: P49711  
Source: ENCSR445NJB
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ 0.00 0.01 -0.00 0.02 -0.00 -0.00 -0.00 -0.00 -0.00 0.01 -0.00 -0.00 -0.00 0.02 -0.00 -0.01 -0.00 -0.00 -0.01 -0.00 0.01 -0.00 ]
C [ -0.00 0.00 0.01 -0.00 0.02 0.06 -0.00 0.13 0.19 0.06 0.08 0.19 0.00 -0.00 0.01 0.01 -0.00 -0.00 0.02 0.01 -0.00 0.00 ]
G [ 0.00 0.00 0.01 0.01 0.04 -0.00 0.11 -0.00 -0.00 0.00 -0.00 -0.00 -0.00 0.02 0.06 -0.00 0.18 0.09 -0.00 0.01 0.01 0.00 ]
T [ 0.00 -0.00 0.01 -0.00 -0.00 0.01 -0.00 -0.00 -0.00 -0.00 0.02 -0.00 0.08 -0.01 -0.00 0.03 -0.00 -0.00 0.00 -0.01 -0.00 -0.00 ]

Frequency matrix

       
A [ 4984 5047 4926 4728 4865 5676 5441 5111 5050 5206 4588 5519 5371 4290 4473 4002 6453 7694 2651 8955 2439 1293 1977 1705 332 6842 256 234 1775 8030 905 3412 373 1742 3922 5034 7369 5569 6099 5348 5046 4940 5424 5404 6138 8153 6415 4637 5065 4924 ]
C [ 5609 5438 5489 5647 5697 4937 4958 5567 5700 5771 5581 3696 3473 5344 5784 8598 4629 5336 6203 2230 6131 10301 880 17803 20277 11878 12833 20419 2341 1943 7568 3752 378 1839 8933 6530 3524 5239 4528 4971 5176 4775 4127 3718 4949 4824 5008 5054 4280 6607 ]
G [ 5359 5229 5309 5333 5121 4929 4824 4897 5010 5682 4542 6527 7661 6742 5547 3924 4067 4536 5057 6869 10644 1278 14796 1022 127 852 187 96 604 7606 10862 1415 19107 15098 2742 4686 6965 5587 5063 5526 5787 6297 7065 7797 5317 3971 4434 4615 6256 5431 ]
T [ 5228 5466 5456 5472 5497 5638 5957 5605 5420 4521 6469 5438 4675 4804 5376 4656 6031 3614 7269 3126 1966 8308 3527 650 444 1608 7904 431 16460 3601 1845 12601 1322 2501 5583 4930 3322 4785 5490 5335 5171 5168 4564 4261 4776 4232 5323 6874 5579 4218 ]

Hypothetical CWM

   
A [ -0.00 -0.01 0.02 0.03 -0.04 0.04 -0.01 -0.07 -0.02 0.01 -0.04 0.03 -0.08 -0.03 -0.03 0.07 -0.05 -0.03 -0.08 -0.03 -0.02 -0.00 0.02 0.01 0.01 0.00 0.00 ]
C [ 0.02 0.05 0.01 0.03 0.04 -0.00 0.06 0.15 -0.03 0.15 0.20 0.12 0.15 0.20 0.04 -0.01 0.06 0.09 -0.02 -0.02 0.07 0.05 0.01 0.02 0.01 0.02 0.01 ]
G [ 0.03 0.01 0.02 0.02 0.04 0.06 0.09 -0.01 0.16 -0.03 -0.04 0.01 -0.06 -0.02 0.02 0.07 0.13 -0.00 0.20 0.13 -0.01 0.04 0.06 0.03 0.01 0.02 0.03 ]
T [ 0.00 -0.00 0.02 -0.02 0.04 -0.02 -0.02 0.03 -0.01 -0.05 -0.04 -0.07 0.06 -0.04 0.10 -0.01 -0.02 0.04 -0.02 -0.01 0.02 -0.01 -0.02 0.01 0.01 0.01 0.00 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_1

Num. of seqlets: 1753

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_2

Num. of seqlets: 409

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_3

Num. of seqlets: 392

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_5

Num. of seqlets: 195

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_6

Num. of seqlets: 144

CWM

PFM

     

HCWM

447 profiles found for the same TF (CTCF) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000001.1 CTCF ENCSR000AHD MCF-7 Homo sapiens MA0139.2
BP000002.1 CTCF ENCSR000AKB GM12878 Homo sapiens MA0139.2
BP000003.1 CTCF ENCSR000AKO K562 Homo sapiens MA0139.2
BP000004.1 CTCF ENCSR000ALA endothelial cell of umbilical vein Homo sapiens MA0139.2
BP000005.1 CTCF ENCSR000ALJ keratinocyte Homo sapiens MA0139.2
BP000006.1 CTCF ENCSR000ALV mammary epithelial cell Homo sapiens MA0139.2
BP000007.1 CTCF ENCSR000AMA HepG2 Homo sapiens MA0139.2
BP000008.1 CTCF ENCSR000AMF H1 Homo sapiens MA0139.2
BP000009.1 CTCF ENCSR000ANE skeletal muscle myoblast Homo sapiens MA0139.2
BP000010.1 CTCF ENCSR000ANO fibroblast of lung Homo sapiens MA0139.2
Showing 10 profiles of page 1 from 45 pages