Detailed information of deep learning profile BP000265.1

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This page shows detailed deep learning-derived predictions and motifs for CTCF in esophagus muscularis mucosa using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: CTCF
Model ID: BP000265.1
Cell line/tissue: esophagus muscularis mucosa
Class: C2H2 zinc finger factors
Family: More than 3 adjacent zinc fingers
JASPAR ID: MA0139.2
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: P49711  
Source: ENCSR443WKD
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ -0.00 -0.00 -0.01 0.00 -0.00 -0.00 0.03 -0.00 -0.01 0.07 -0.00 0.02 -0.00 -0.00 -0.00 -0.00 0.01 -0.00 -0.00 0.01 -0.00 ]
C [ 0.00 0.01 0.01 -0.00 0.09 0.18 -0.00 0.06 0.02 -0.00 -0.00 -0.00 -0.00 -0.00 -0.00 0.09 -0.00 0.03 0.01 0.01 0.00 ]
G [ 0.00 -0.00 0.01 0.02 -0.00 -0.00 0.01 0.01 -0.00 0.00 0.18 0.07 0.05 0.18 0.12 -0.00 0.06 0.01 -0.00 0.01 0.00 ]
T [ -0.00 0.01 -0.00 -0.00 -0.00 -0.00 -0.00 -0.00 0.02 -0.00 -0.00 -0.00 0.01 -0.00 -0.00 -0.00 -0.00 -0.00 0.01 -0.00 0.01 ]

Frequency matrix

       
A [ 4476 3925 3771 5305 6894 4965 3836 4547 3766 4223 4732 5064 5228 5265 4520 2842 4400 5369 2026 777 13033 1296 3209 16237 274 7836 1225 352 500 3068 7998 1873 2774 7131 3455 5841 4353 4927 4589 4175 5166 6418 4195 5068 5319 5790 5252 5077 5157 5081 ]
C [ 4643 3623 4895 5895 4114 3807 3275 4705 7738 6668 6118 5394 4987 4451 5046 6329 3990 2180 14879 18549 1021 10959 7385 599 91 161 746 124 791 14119 1046 9942 6387 4747 4115 3648 3483 5333 6527 7579 6289 4018 5428 4520 4459 4269 4518 4683 4968 4915 ]
G [ 4956 6622 6471 3809 4587 4686 4317 4488 3213 3482 4349 4534 4490 4005 4829 3041 6558 8437 1430 211 3046 6847 1643 1698 19233 11541 10997 19034 16819 765 9659 5876 2103 5708 5093 4291 8225 5322 4665 2913 3107 5260 5189 5336 5009 4385 4445 5416 5242 5204 ]
T [ 5654 5559 4592 4720 4134 6271 8301 5989 5012 5356 4530 4737 5024 6008 5334 7517 4781 3743 1394 192 2629 627 7492 1195 131 191 6761 219 1619 1777 1026 2038 8465 2143 7066 5949 3668 4147 3948 5062 5167 4033 4917 4805 4942 5285 5514 4553 4362 4529 ]

Hypothetical CWM

   
A [ -0.00 0.01 0.00 0.00 -0.02 -0.02 0.02 -0.00 -0.02 0.04 -0.03 -0.01 0.09 -0.05 0.06 -0.06 -0.04 -0.04 -0.01 0.03 -0.02 -0.02 0.03 -0.02 0.02 -0.00 0.00 ]
C [ 0.03 0.02 0.01 0.03 0.06 0.04 -0.01 0.12 0.18 -0.03 0.12 0.06 0.01 -0.02 -0.07 0.00 -0.05 -0.04 0.13 -0.02 0.07 0.04 0.04 0.02 0.02 0.01 0.02 ]
G [ 0.01 0.02 0.02 0.02 0.00 0.04 0.06 -0.03 -0.03 0.08 0.06 -0.01 0.03 0.18 0.14 0.11 0.18 0.14 -0.02 0.14 0.06 0.00 0.03 0.03 0.00 0.04 0.02 ]
T [ -0.00 0.00 0.01 0.01 0.02 -0.00 -0.01 -0.03 -0.08 -0.03 -0.05 0.05 -0.03 -0.03 -0.08 0.03 -0.04 0.01 -0.02 -0.06 -0.01 0.03 -0.05 0.03 0.01 -0.01 -0.01 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_3

Num. of seqlets: 188

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_4

Num. of seqlets: 126

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_5

Num. of seqlets: 89

CWM

PFM

     

HCWM

447 profiles found for the same TF (CTCF) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000001.1 CTCF ENCSR000AHD MCF-7 Homo sapiens MA0139.2
BP000002.1 CTCF ENCSR000AKB GM12878 Homo sapiens MA0139.2
BP000003.1 CTCF ENCSR000AKO K562 Homo sapiens MA0139.2
BP000004.1 CTCF ENCSR000ALA endothelial cell of umbilical vein Homo sapiens MA0139.2
BP000005.1 CTCF ENCSR000ALJ keratinocyte Homo sapiens MA0139.2
BP000006.1 CTCF ENCSR000ALV mammary epithelial cell Homo sapiens MA0139.2
BP000007.1 CTCF ENCSR000AMA HepG2 Homo sapiens MA0139.2
BP000008.1 CTCF ENCSR000AMF H1 Homo sapiens MA0139.2
BP000009.1 CTCF ENCSR000ANE skeletal muscle myoblast Homo sapiens MA0139.2
BP000010.1 CTCF ENCSR000ANO fibroblast of lung Homo sapiens MA0139.2
Showing 10 profiles of page 1 from 45 pages