Detailed information of deep learning profile BP000265.1

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This page shows detailed deep learning-derived predictions and motifs for CTCF in esophagus muscularis mucosa using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: CTCF
Model ID: BP000265.1
Cell line/tissue: esophagus muscularis mucosa
Class: C2H2 zinc finger factors
Family: More than 3 adjacent zinc fingers
JASPAR ID: MA0139.2
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: P49711  
Source: ENCSR443WKD
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ 0.01 -0.00 0.01 -0.00 -0.00 -0.00 -0.00 -0.00 0.01 -0.00 -0.00 -0.00 0.02 -0.00 -0.00 -0.00 -0.00 -0.00 -0.00 0.01 -0.00 ]
C [ 0.00 0.01 -0.00 0.01 0.06 -0.00 0.12 0.18 0.05 0.07 0.18 0.00 -0.00 0.01 0.01 -0.00 -0.00 0.02 0.01 -0.00 0.00 ]
G [ 0.00 0.01 0.01 0.03 -0.00 0.09 -0.00 -0.00 -0.00 -0.00 -0.00 -0.00 0.02 0.06 -0.00 0.18 0.09 -0.00 0.01 0.01 0.00 ]
T [ -0.00 0.01 -0.00 -0.00 0.01 -0.00 -0.00 -0.00 -0.00 0.02 -0.00 0.07 -0.01 -0.00 0.03 -0.00 -0.00 0.00 -0.01 -0.00 -0.00 ]

Frequency matrix

       
A [ 4529 4362 4553 5514 5285 4942 4805 4917 4033 5167 5062 3948 4147 3668 5949 7066 2143 8465 2038 1026 1777 1619 219 6761 191 131 1195 7492 627 2629 192 1394 3743 4781 7517 5334 6008 5024 4737 4530 5356 5012 5989 8301 6271 4134 4720 4592 5559 5654 ]
C [ 5204 5242 5416 4445 4385 5009 5336 5189 5260 3107 2913 4665 5322 8225 4291 5093 5708 2103 5876 9659 765 16819 19034 10997 11541 19233 1698 1643 6847 3046 211 1430 8437 6558 3041 4829 4005 4490 4534 4349 3482 3213 4488 4317 4686 4587 3809 6471 6622 4956 ]
G [ 4915 4968 4683 4518 4269 4459 4520 5428 4018 6289 7579 6527 5333 3483 3648 4115 4747 6387 9942 1046 14119 791 124 746 161 91 599 7385 10959 1021 18549 14879 2180 3990 6329 5046 4451 4987 5394 6118 6668 7738 4705 3275 3807 4114 5895 4895 3623 4643 ]
T [ 5081 5157 5077 5252 5790 5319 5068 4195 6418 5166 4175 4589 4927 4353 5841 3455 7131 2774 1873 7998 3068 500 352 1225 7836 274 16237 3209 1296 13033 777 2026 5369 4400 2842 4520 5265 5228 5064 4732 4223 3766 4547 3836 4965 6894 5305 3771 3925 4476 ]

Hypothetical CWM

   
A [ -0.01 -0.01 0.01 0.03 -0.05 0.03 -0.01 -0.06 -0.02 0.01 -0.04 0.03 -0.08 -0.03 -0.03 0.05 -0.05 -0.03 -0.08 -0.03 -0.01 -0.00 0.02 0.01 0.01 0.00 -0.00 ]
C [ 0.02 0.04 0.00 0.03 0.03 0.00 0.06 0.14 -0.02 0.14 0.18 0.11 0.14 0.18 0.03 -0.01 0.06 0.08 -0.03 -0.03 0.06 0.04 0.00 0.02 0.02 0.02 0.01 ]
G [ 0.02 0.01 0.02 0.02 0.04 0.04 0.07 -0.02 0.13 -0.04 -0.05 0.00 -0.07 -0.02 0.01 0.06 0.12 -0.03 0.18 0.12 -0.01 0.04 0.06 0.03 0.01 0.02 0.03 ]
T [ 0.00 -0.00 0.02 -0.02 0.03 -0.02 -0.02 0.03 -0.01 -0.04 -0.04 -0.06 0.06 -0.05 0.09 -0.01 -0.03 0.04 -0.02 -0.00 0.02 -0.02 -0.02 0.00 0.00 0.01 -0.00 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_3

Num. of seqlets: 188

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_4

Num. of seqlets: 126

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_5

Num. of seqlets: 89

CWM

PFM

     

HCWM

447 profiles found for the same TF (CTCF) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000001.1 CTCF ENCSR000AHD MCF-7 Homo sapiens MA0139.2
BP000002.1 CTCF ENCSR000AKB GM12878 Homo sapiens MA0139.2
BP000003.1 CTCF ENCSR000AKO K562 Homo sapiens MA0139.2
BP000004.1 CTCF ENCSR000ALA endothelial cell of umbilical vein Homo sapiens MA0139.2
BP000005.1 CTCF ENCSR000ALJ keratinocyte Homo sapiens MA0139.2
BP000006.1 CTCF ENCSR000ALV mammary epithelial cell Homo sapiens MA0139.2
BP000007.1 CTCF ENCSR000AMA HepG2 Homo sapiens MA0139.2
BP000008.1 CTCF ENCSR000AMF H1 Homo sapiens MA0139.2
BP000009.1 CTCF ENCSR000ANE skeletal muscle myoblast Homo sapiens MA0139.2
BP000010.1 CTCF ENCSR000ANO fibroblast of lung Homo sapiens MA0139.2
Showing 10 profiles of page 1 from 45 pages