Detailed information of deep learning profile BP000264.1

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This page shows detailed deep learning-derived predictions and motifs for CTCF in middle frontal area 46 using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: CTCF
Model ID: BP000264.1
Cell line/tissue: middle frontal area 46
Class: C2H2 zinc finger factors
Family: More than 3 adjacent zinc fingers
JASPAR ID: MA0139.2
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: P49711  
Source: ENCSR443NWG
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ 0.00 0.01 -0.00 0.01 -0.00 -0.00 -0.00 -0.00 -0.00 0.01 -0.00 -0.00 -0.00 0.02 -0.00 -0.01 -0.00 -0.00 -0.00 -0.00 0.00 -0.00 ]
C [ -0.00 0.00 0.01 -0.00 0.01 0.06 -0.00 0.11 0.15 0.05 0.06 0.15 0.00 -0.00 0.01 0.01 -0.00 -0.00 0.02 0.01 -0.00 0.00 ]
G [ 0.00 0.00 0.00 0.01 0.03 -0.00 0.10 0.00 0.00 0.00 0.00 -0.00 0.00 0.02 0.05 -0.00 0.16 0.08 -0.00 0.01 0.01 0.00 ]
T [ 0.00 -0.00 0.01 -0.00 -0.00 0.01 -0.00 -0.00 -0.00 -0.00 0.02 -0.00 0.06 -0.01 -0.00 0.03 -0.00 -0.00 0.00 -0.00 -0.00 -0.00 ]

Frequency matrix

       
A [ 4375 4285 4396 5132 4906 4664 4531 4720 4182 4991 4841 3895 4144 3671 5740 6799 2328 7911 2226 1200 1681 1604 300 6309 303 289 1683 7074 864 3115 159 1581 3554 4528 6681 5003 5458 4886 4548 4457 5031 4814 5496 7153 5774 4265 4566 4488 5205 5354 ]
C [ 5079 5080 5152 4435 4467 5020 5228 5288 5107 3352 3102 4726 5169 7697 4210 4840 5803 2155 5648 9341 767 16032 18308 10515 11322 18269 2345 1798 6940 2743 224 1644 8145 6050 3148 4870 4121 4499 4562 4367 3728 3458 4553 4437 4607 4591 3942 5831 6108 4859 ]
G [ 4778 4826 4679 4543 4380 4393 4577 5102 4003 5965 7030 6203 5111 3554 3809 4171 4485 6194 9446 1065 13573 958 105 870 286 132 594 6932 9804 1204 18242 13723 2501 4162 6335 4990 4598 4993 5309 5729 6285 7004 4842 3731 4065 4243 5647 4986 3898 4538 ]
T [ 4905 4946 4910 5027 5384 5060 4801 4027 5845 4829 4164 4313 4713 4215 5378 3327 6521 2877 1817 7531 3116 543 424 1443 7226 447 14515 3333 1529 12075 512 2189 4937 4397 2973 4274 4960 4759 4718 4584 4093 3861 4246 3816 4691 6038 4982 3832 3926 4386 ]

Hypothetical CWM

   
A [ -0.01 -0.00 -0.01 0.01 0.03 -0.04 0.03 -0.01 -0.05 -0.02 0.01 -0.03 0.03 -0.06 -0.03 -0.02 0.06 -0.04 -0.03 -0.06 -0.02 -0.01 -0.00 0.02 0.00 0.01 0.00 0.00 ]
C [ 0.01 0.02 0.04 0.00 0.02 0.04 0.00 0.05 0.13 -0.02 0.13 0.16 0.10 0.12 0.16 0.04 -0.00 0.06 0.09 -0.02 -0.02 0.06 0.04 0.01 0.02 0.01 0.02 0.01 ]
G [ 0.03 0.02 0.01 0.01 0.02 0.03 0.05 0.07 -0.01 0.14 -0.01 -0.02 0.02 -0.04 -0.00 0.02 0.06 0.11 -0.01 0.17 0.11 -0.00 0.04 0.05 0.02 0.01 0.02 0.02 ]
T [ 0.00 0.00 -0.00 0.01 -0.02 0.03 -0.02 -0.02 0.02 -0.01 -0.05 -0.03 -0.05 0.05 -0.03 0.07 -0.01 -0.02 0.04 -0.02 -0.00 0.02 -0.01 -0.02 0.00 0.00 0.00 -0.00 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_1

Num. of seqlets: 2632

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_2

Num. of seqlets: 1433

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_5

Num. of seqlets: 724

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_7

Num. of seqlets: 383

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_8

Num. of seqlets: 242

CWM

PFM

     

HCWM

447 profiles found for the same TF (CTCF) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000001.1 CTCF ENCSR000AHD MCF-7 Homo sapiens MA0139.2
BP000002.1 CTCF ENCSR000AKB GM12878 Homo sapiens MA0139.2
BP000003.1 CTCF ENCSR000AKO K562 Homo sapiens MA0139.2
BP000004.1 CTCF ENCSR000ALA endothelial cell of umbilical vein Homo sapiens MA0139.2
BP000005.1 CTCF ENCSR000ALJ keratinocyte Homo sapiens MA0139.2
BP000006.1 CTCF ENCSR000ALV mammary epithelial cell Homo sapiens MA0139.2
BP000007.1 CTCF ENCSR000AMA HepG2 Homo sapiens MA0139.2
BP000008.1 CTCF ENCSR000AMF H1 Homo sapiens MA0139.2
BP000009.1 CTCF ENCSR000ANE skeletal muscle myoblast Homo sapiens MA0139.2
BP000010.1 CTCF ENCSR000ANO fibroblast of lung Homo sapiens MA0139.2
Showing 10 profiles of page 1 from 45 pages