Detailed information of deep learning profile BP000264.1

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This page shows detailed deep learning-derived predictions and motifs for CTCF in middle frontal area 46 using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: CTCF
Model ID: BP000264.1
Cell line/tissue: middle frontal area 46
Class: C2H2 zinc finger factors
Family: More than 3 adjacent zinc fingers
JASPAR ID: MA0139.2
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: P49711  
Source: ENCSR443NWG
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ -0.00 -0.00 -0.00 0.00 -0.00 -0.00 0.03 -0.00 -0.01 0.06 -0.00 0.02 -0.00 -0.00 -0.00 -0.00 0.01 -0.00 -0.00 0.01 -0.00 0.00 ]
C [ 0.00 0.01 0.01 -0.00 0.08 0.16 -0.00 0.05 0.02 0.00 -0.00 0.00 0.00 0.00 0.00 0.10 -0.00 0.03 0.01 0.00 0.00 0.00 ]
G [ 0.00 -0.00 0.01 0.02 -0.00 -0.00 0.01 0.01 -0.00 0.00 0.15 0.06 0.05 0.15 0.11 -0.00 0.06 0.01 -0.00 0.01 0.00 -0.00 ]
T [ -0.00 0.00 -0.00 -0.00 -0.00 -0.00 -0.01 -0.00 0.02 -0.00 -0.00 -0.00 0.01 -0.00 -0.00 -0.00 -0.00 -0.00 0.01 -0.00 0.01 0.00 ]

Frequency matrix

       
A [ 4386 3926 3832 4982 6038 4691 3816 4246 3861 4093 4584 4718 4759 4960 4274 2973 4397 4937 2189 512 12075 1529 3333 14515 447 7226 1443 424 543 3116 7531 1817 2877 6521 3327 5378 4215 4713 4313 4164 4829 5845 4027 4801 5060 5384 5027 4910 4946 4905 ]
C [ 4538 3898 4986 5647 4243 4065 3731 4842 7004 6285 5729 5309 4993 4598 4990 6335 4162 2501 13723 18242 1204 9804 6932 594 132 286 870 105 958 13573 1065 9446 6194 4485 4171 3809 3554 5111 6203 7030 5965 4003 5102 4577 4393 4380 4543 4679 4826 4778 ]
G [ 4859 6108 5831 3942 4591 4607 4437 4553 3458 3728 4367 4562 4499 4121 4870 3148 6050 8145 1644 224 2743 6940 1798 2345 18269 11322 10515 18308 16032 767 9341 5648 2155 5803 4840 4210 7697 5169 4726 3102 3352 5107 5288 5228 5020 4467 4435 5152 5080 5079 ]
T [ 5354 5205 4488 4566 4265 5774 7153 5496 4814 5031 4457 4548 4886 5458 5003 6681 4528 3554 1581 159 3115 864 7074 1683 289 303 6309 300 1604 1681 1200 2226 7911 2328 6799 5740 3671 4144 3895 4841 4991 4182 4720 4531 4664 4906 5132 4396 4285 4375 ]

Hypothetical CWM

   
A [ -0.00 0.00 0.00 0.00 -0.02 -0.01 0.02 -0.00 -0.02 0.04 -0.02 -0.01 0.07 -0.03 0.05 -0.05 -0.03 -0.05 -0.01 0.02 -0.02 -0.02 0.03 -0.02 0.01 -0.00 0.00 0.00 ]
C [ 0.02 0.02 0.01 0.02 0.05 0.04 -0.00 0.11 0.17 -0.01 0.11 0.06 0.02 -0.00 -0.04 0.02 -0.02 -0.01 0.14 -0.01 0.07 0.05 0.03 0.02 0.01 0.01 0.02 0.03 ]
G [ 0.01 0.02 0.01 0.02 0.01 0.04 0.06 -0.02 -0.02 0.09 0.06 -0.00 0.04 0.16 0.12 0.10 0.16 0.13 -0.02 0.13 0.05 0.00 0.04 0.02 0.00 0.04 0.02 0.01 ]
T [ 0.00 0.00 0.01 0.00 0.02 -0.00 -0.01 -0.02 -0.06 -0.03 -0.04 0.06 -0.02 -0.03 -0.06 0.03 -0.03 0.01 -0.02 -0.05 -0.01 0.03 -0.04 0.03 0.01 -0.01 -0.00 -0.01 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_1

Num. of seqlets: 2632

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_2

Num. of seqlets: 1433

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_5

Num. of seqlets: 724

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_7

Num. of seqlets: 383

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_8

Num. of seqlets: 242

CWM

PFM

     

HCWM

447 profiles found for the same TF (CTCF) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000001.1 CTCF ENCSR000AHD MCF-7 Homo sapiens MA0139.2
BP000002.1 CTCF ENCSR000AKB GM12878 Homo sapiens MA0139.2
BP000003.1 CTCF ENCSR000AKO K562 Homo sapiens MA0139.2
BP000004.1 CTCF ENCSR000ALA endothelial cell of umbilical vein Homo sapiens MA0139.2
BP000005.1 CTCF ENCSR000ALJ keratinocyte Homo sapiens MA0139.2
BP000006.1 CTCF ENCSR000ALV mammary epithelial cell Homo sapiens MA0139.2
BP000007.1 CTCF ENCSR000AMA HepG2 Homo sapiens MA0139.2
BP000008.1 CTCF ENCSR000AMF H1 Homo sapiens MA0139.2
BP000009.1 CTCF ENCSR000ANE skeletal muscle myoblast Homo sapiens MA0139.2
BP000010.1 CTCF ENCSR000ANO fibroblast of lung Homo sapiens MA0139.2
Showing 10 profiles of page 1 from 45 pages