Detailed information of deep learning profile BP000263.1

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This page shows detailed deep learning-derived predictions and motifs for CTCF in tibial nerve using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: CTCF
Model ID: BP000263.1
Cell line/tissue: tibial nerve
Class: C2H2 zinc finger factors
Family: More than 3 adjacent zinc fingers
JASPAR ID: MA0139.2
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: P49711  
Source: ENCSR434XLP
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ -0.00 -0.00 -0.00 0.00 -0.00 -0.00 0.03 -0.00 -0.01 0.07 -0.00 0.02 -0.00 -0.00 -0.00 -0.00 0.01 -0.00 -0.00 0.01 -0.00 ]
C [ 0.00 0.01 0.00 -0.00 0.08 0.16 -0.00 0.06 0.02 -0.00 -0.00 0.00 0.00 -0.00 -0.00 0.09 -0.00 0.03 0.01 0.00 0.00 ]
G [ 0.00 -0.00 0.01 0.02 -0.00 -0.00 0.01 0.01 -0.00 0.00 0.16 0.06 0.04 0.16 0.10 -0.00 0.05 0.01 -0.00 0.00 0.00 ]
T [ 0.00 0.01 -0.00 -0.00 -0.00 -0.00 -0.00 -0.00 0.02 -0.00 -0.00 -0.00 0.01 -0.00 -0.00 -0.00 -0.00 -0.00 0.01 -0.00 0.01 ]

Frequency matrix

       
A [ 4415 3835 3617 5455 7018 4888 3686 4555 3704 4097 4819 5147 5314 5436 4679 2779 4253 5640 1947 432 13802 1113 3221 16485 272 8104 1053 324 505 3005 8236 1927 2748 7351 3557 6087 4318 4916 4723 4070 5128 6656 4083 5084 5508 6008 5340 5077 5217 5141 ]
C [ 4537 3322 4962 6062 4041 3625 3035 4679 7968 6771 6165 5459 5019 4246 4759 6066 3955 2083 15146 19006 947 11280 7379 515 65 143 805 127 813 14231 1054 9811 6610 4787 3899 3609 3347 5424 6541 7904 6351 3768 5473 4545 4336 4162 4486 4577 4897 4947 ]
G [ 4930 6969 6603 3537 4642 4605 4270 4403 3027 3429 4240 4377 4396 3793 4817 2888 6757 8413 1308 147 2634 6739 1551 1656 19265 11311 10741 19049 16807 776 9465 6073 2111 5574 5235 4119 8402 5263 4599 2695 2960 5327 5154 5212 4891 4242 4257 5457 5178 5151 ]
T [ 5841 5597 4541 4669 4022 6605 8732 6086 5024 5426 4499 4740 4994 6248 5468 7990 4758 3587 1322 138 2340 591 7572 1067 121 165 7124 223 1598 1711 968 1912 8254 2011 7032 5908 3656 4120 3860 5054 5284 3972 5013 4882 4988 5311 5640 4612 4431 4484 ]

Hypothetical CWM

   
A [ 0.01 0.01 0.00 -0.02 -0.01 0.02 -0.01 -0.03 0.04 -0.02 -0.02 0.08 -0.04 0.05 -0.05 -0.03 -0.04 -0.02 0.02 -0.02 -0.02 0.03 -0.02 0.01 -0.00 0.00 ]
C [ 0.01 0.00 0.02 0.04 0.03 -0.01 0.11 0.17 -0.02 0.11 0.05 0.02 -0.01 -0.04 0.01 -0.03 -0.02 0.12 -0.01 0.06 0.04 0.03 0.01 0.01 0.01 0.01 ]
G [ 0.01 0.01 0.02 0.00 0.04 0.05 -0.02 -0.02 0.08 0.05 -0.01 0.03 0.16 0.12 0.09 0.16 0.12 -0.02 0.12 0.05 -0.01 0.02 0.02 -0.01 0.03 0.02 ]
T [ 0.01 0.01 0.01 0.02 -0.01 -0.01 -0.03 -0.06 -0.03 -0.05 0.06 -0.04 -0.03 -0.07 0.02 -0.04 0.01 -0.02 -0.05 -0.01 0.03 -0.04 0.02 0.01 -0.01 -0.01 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_2

Num. of seqlets: 484

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_4

Num. of seqlets: 136

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_5

Num. of seqlets: 106

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_6

Num. of seqlets: 82

CWM

PFM

     

HCWM

447 profiles found for the same TF (CTCF) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000001.1 CTCF ENCSR000AHD MCF-7 Homo sapiens MA0139.2
BP000002.1 CTCF ENCSR000AKB GM12878 Homo sapiens MA0139.2
BP000003.1 CTCF ENCSR000AKO K562 Homo sapiens MA0139.2
BP000004.1 CTCF ENCSR000ALA endothelial cell of umbilical vein Homo sapiens MA0139.2
BP000005.1 CTCF ENCSR000ALJ keratinocyte Homo sapiens MA0139.2
BP000006.1 CTCF ENCSR000ALV mammary epithelial cell Homo sapiens MA0139.2
BP000007.1 CTCF ENCSR000AMA HepG2 Homo sapiens MA0139.2
BP000008.1 CTCF ENCSR000AMF H1 Homo sapiens MA0139.2
BP000009.1 CTCF ENCSR000ANE skeletal muscle myoblast Homo sapiens MA0139.2
BP000010.1 CTCF ENCSR000ANO fibroblast of lung Homo sapiens MA0139.2
Showing 10 profiles of page 1 from 45 pages