Detailed information of deep learning profile BP000263.1

  1. Home
  2. Deep Learning Profile > BP000263.1
This page shows detailed deep learning-derived predictions and motifs for CTCF in tibial nerve using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: CTCF
Model ID: BP000263.1
Cell line/tissue: tibial nerve
Class: C2H2 zinc finger factors
Family: More than 3 adjacent zinc fingers
JASPAR ID: MA0139.2
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: P49711  
Source: ENCSR434XLP
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ 0.01 -0.00 0.01 -0.00 -0.00 -0.00 -0.00 -0.00 0.01 -0.00 -0.00 -0.00 0.02 -0.00 -0.00 -0.00 -0.00 -0.00 -0.00 0.01 0.00 ]
C [ 0.00 0.00 -0.00 0.01 0.05 -0.00 0.10 0.16 0.04 0.06 0.16 0.00 -0.00 0.01 0.01 -0.00 -0.00 0.02 0.01 -0.00 0.00 ]
G [ 0.00 0.00 0.01 0.03 -0.00 0.09 -0.00 -0.00 0.00 0.00 -0.00 -0.00 0.02 0.06 -0.00 0.16 0.08 -0.00 0.00 0.01 0.00 ]
T [ -0.00 0.01 -0.00 -0.00 0.01 -0.00 -0.00 -0.00 -0.00 0.02 -0.00 0.07 -0.01 -0.00 0.03 -0.00 -0.00 0.00 -0.00 -0.00 -0.00 ]

Frequency matrix

       
A [ 4484 4431 4612 5640 5311 4988 4882 5013 3972 5284 5054 3860 4120 3656 5908 7032 2011 8254 1912 968 1711 1598 223 7124 165 121 1067 7572 591 2340 138 1322 3587 4758 7990 5468 6248 4994 4740 4499 5426 5024 6086 8732 6605 4022 4669 4541 5597 5841 ]
C [ 5151 5178 5457 4257 4242 4891 5212 5154 5327 2960 2695 4599 5263 8402 4119 5235 5574 2111 6073 9465 776 16807 19049 10741 11311 19265 1656 1551 6739 2634 147 1308 8413 6757 2888 4817 3793 4396 4377 4240 3429 3027 4403 4270 4605 4642 3537 6603 6969 4930 ]
G [ 4947 4897 4577 4486 4162 4336 4545 5473 3768 6351 7904 6541 5424 3347 3609 3899 4787 6610 9811 1054 14231 813 127 805 143 65 515 7379 11280 947 19006 15146 2083 3955 6066 4759 4246 5019 5459 6165 6771 7968 4679 3035 3625 4041 6062 4962 3322 4537 ]
T [ 5141 5217 5077 5340 6008 5508 5084 4083 6656 5128 4070 4723 4916 4318 6087 3557 7351 2748 1927 8236 3005 505 324 1053 8104 272 16485 3221 1113 13802 432 1947 5640 4253 2779 4679 5436 5314 5147 4819 4097 3704 4555 3686 4888 7018 5455 3617 3835 4415 ]

Hypothetical CWM

   
A [ -0.01 -0.01 0.01 0.02 -0.04 0.03 -0.01 -0.05 -0.02 0.01 -0.04 0.02 -0.07 -0.03 -0.04 0.06 -0.05 -0.03 -0.06 -0.03 -0.01 -0.01 0.02 0.01 0.01 0.01 ]
C [ 0.02 0.03 -0.01 0.02 0.02 -0.01 0.05 0.12 -0.02 0.12 0.16 0.09 0.12 0.16 0.03 -0.01 0.05 0.08 -0.02 -0.02 0.05 0.04 0.00 0.02 0.01 0.01 ]
G [ 0.01 0.01 0.01 0.01 0.03 0.04 0.06 -0.01 0.12 -0.02 -0.03 0.01 -0.04 -0.01 0.02 0.05 0.11 -0.02 0.17 0.11 -0.01 0.03 0.04 0.02 0.00 0.01 ]
T [ 0.00 -0.00 0.01 -0.02 0.03 -0.02 -0.02 0.02 -0.02 -0.04 -0.03 -0.05 0.05 -0.04 0.08 -0.02 -0.02 0.04 -0.03 -0.01 0.02 -0.01 -0.02 0.00 0.01 0.01 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_2

Num. of seqlets: 484

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_4

Num. of seqlets: 136

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_5

Num. of seqlets: 106

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_6

Num. of seqlets: 82

CWM

PFM

     

HCWM

447 profiles found for the same TF (CTCF) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000001.1 CTCF ENCSR000AHD MCF-7 Homo sapiens MA0139.2
BP000002.1 CTCF ENCSR000AKB GM12878 Homo sapiens MA0139.2
BP000003.1 CTCF ENCSR000AKO K562 Homo sapiens MA0139.2
BP000004.1 CTCF ENCSR000ALA endothelial cell of umbilical vein Homo sapiens MA0139.2
BP000005.1 CTCF ENCSR000ALJ keratinocyte Homo sapiens MA0139.2
BP000006.1 CTCF ENCSR000ALV mammary epithelial cell Homo sapiens MA0139.2
BP000007.1 CTCF ENCSR000AMA HepG2 Homo sapiens MA0139.2
BP000008.1 CTCF ENCSR000AMF H1 Homo sapiens MA0139.2
BP000009.1 CTCF ENCSR000ANE skeletal muscle myoblast Homo sapiens MA0139.2
BP000010.1 CTCF ENCSR000ANO fibroblast of lung Homo sapiens MA0139.2
Showing 10 profiles of page 1 from 45 pages