Detailed information of deep learning profile BP000262.1

  1. Home
  2. Deep Learning Profile > BP000262.1
This page shows detailed deep learning-derived predictions and motifs for CTCF in A549 using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: CTCF
Model ID: BP000262.1
Cell line/tissue: A549
Class: C2H2 zinc finger factors
Family: More than 3 adjacent zinc fingers
JASPAR ID: MA0139.2
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: P49711  
Source: ENCSR432AXE
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ 0.01 -0.00 0.01 -0.00 -0.00 -0.00 -0.00 -0.00 0.01 -0.00 -0.00 -0.00 0.02 -0.00 -0.00 -0.00 -0.00 -0.00 -0.00 0.00 0.00 ]
C [ 0.00 0.00 -0.00 0.01 0.05 -0.00 0.10 0.14 0.05 0.06 0.15 0.00 -0.00 0.01 0.01 -0.00 -0.00 0.01 0.01 -0.00 0.00 ]
G [ 0.00 0.01 0.01 0.03 -0.00 0.08 0.00 -0.00 -0.00 -0.00 -0.00 -0.00 0.01 0.05 -0.00 0.14 0.07 -0.00 0.00 0.01 0.00 ]
T [ -0.00 0.01 -0.00 -0.00 0.01 -0.00 -0.00 -0.00 -0.00 0.02 -0.00 0.06 -0.00 -0.00 0.02 -0.00 -0.00 0.00 -0.00 -0.00 -0.00 ]

Frequency matrix

       
A [ 4494 4551 4386 4184 4255 4814 4752 4487 4490 4551 4021 4769 4627 3738 3995 3507 5702 6718 2338 7969 2124 1185 1641 1512 232 6295 214 158 1497 6977 757 3070 323 1492 3511 4669 6568 4937 5435 4806 4401 4369 4890 4655 5462 7244 5757 4023 4457 4280 ]
C [ 4841 4754 4839 4912 4978 4488 4436 5012 5033 5011 4797 3247 3131 4832 4832 7605 4064 4747 5322 1783 4983 9078 767 15700 17913 10349 11398 17969 1905 1817 6645 2732 522 1698 7673 5826 3145 4566 3873 4364 4332 4130 3581 3368 4199 4327 4346 4405 3732 5808 ]
G [ 4753 4514 4677 4768 4445 4358 4377 4186 4373 5004 4151 5828 6748 5813 4882 3514 3559 3854 4465 6084 9697 1218 13186 863 97 637 151 111 554 6839 9522 1436 16872 13242 2280 3975 5993 4858 4554 4812 5168 5596 6119 6889 4558 3422 3845 4054 5425 4697 ]
T [ 4491 4760 4677 4715 4901 4919 5014 4894 4683 4013 5610 4735 4073 4196 4870 3953 5254 3260 6454 2743 1775 7098 2985 504 337 1298 6816 341 14623 2946 1655 11341 862 2147 5115 4109 2873 4218 4717 4597 4678 4484 3989 3667 4360 3586 4631 6097 4965 3794 ]

Hypothetical CWM

   
A [ -0.01 -0.01 0.01 0.02 -0.04 0.03 -0.02 -0.06 -0.02 0.00 -0.04 0.03 -0.07 -0.04 -0.03 0.05 -0.05 -0.02 -0.06 -0.02 -0.02 -0.01 0.01 0.00 0.01 ]
C [ 0.01 0.03 -0.00 0.02 0.02 -0.01 0.03 0.11 -0.03 0.11 0.14 0.09 0.11 0.15 0.02 -0.01 0.04 0.06 -0.02 -0.02 0.04 0.03 -0.00 0.01 0.01 ]
G [ 0.02 0.01 0.01 0.01 0.03 0.04 0.06 -0.02 0.12 -0.03 -0.04 -0.01 -0.05 -0.03 -0.00 0.04 0.10 -0.02 0.14 0.09 -0.01 0.02 0.04 0.01 0.00 ]
T [ 0.00 -0.01 0.01 -0.02 0.03 -0.02 -0.02 0.02 -0.02 -0.05 -0.04 -0.06 0.05 -0.05 0.07 -0.02 -0.02 0.03 -0.03 -0.01 0.02 -0.02 -0.02 -0.00 0.00 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_5

Num. of seqlets: 36

CWM

PFM

     

HCWM

447 profiles found for the same TF (CTCF) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000001.1 CTCF ENCSR000AHD MCF-7 Homo sapiens MA0139.2
BP000002.1 CTCF ENCSR000AKB GM12878 Homo sapiens MA0139.2
BP000003.1 CTCF ENCSR000AKO K562 Homo sapiens MA0139.2
BP000004.1 CTCF ENCSR000ALA endothelial cell of umbilical vein Homo sapiens MA0139.2
BP000005.1 CTCF ENCSR000ALJ keratinocyte Homo sapiens MA0139.2
BP000006.1 CTCF ENCSR000ALV mammary epithelial cell Homo sapiens MA0139.2
BP000007.1 CTCF ENCSR000AMA HepG2 Homo sapiens MA0139.2
BP000008.1 CTCF ENCSR000AMF H1 Homo sapiens MA0139.2
BP000009.1 CTCF ENCSR000ANE skeletal muscle myoblast Homo sapiens MA0139.2
BP000010.1 CTCF ENCSR000ANO fibroblast of lung Homo sapiens MA0139.2
Showing 10 profiles of page 1 from 45 pages