Detailed information of deep learning profile BP000262.1

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This page shows detailed deep learning-derived predictions and motifs for CTCF in A549 using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: CTCF
Model ID: BP000262.1
Cell line/tissue: A549
Class: C2H2 zinc finger factors
Family: More than 3 adjacent zinc fingers
JASPAR ID: MA0139.2
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: P49711  
Source: ENCSR432AXE
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ -0.00 -0.00 -0.00 0.00 -0.00 -0.00 0.02 -0.00 -0.00 0.06 -0.00 0.02 -0.00 -0.00 -0.00 -0.00 0.01 -0.00 -0.00 0.01 -0.00 ]
C [ 0.00 0.01 0.00 -0.00 0.07 0.14 -0.00 0.05 0.01 -0.00 -0.00 -0.00 -0.00 -0.00 0.00 0.08 -0.00 0.03 0.01 0.01 0.00 ]
G [ 0.00 -0.00 0.01 0.01 -0.00 -0.00 0.01 0.01 -0.00 0.00 0.15 0.06 0.05 0.14 0.10 -0.00 0.05 0.01 -0.00 0.00 0.00 ]
T [ 0.00 0.00 -0.00 -0.00 -0.00 -0.00 -0.00 -0.00 0.02 -0.00 -0.00 -0.00 0.01 -0.00 -0.00 -0.00 -0.00 -0.00 0.01 -0.00 0.01 ]

Frequency matrix

       
A [ 3794 4965 6097 4631 3586 4360 3667 3989 4484 4678 4597 4717 4218 2873 4109 5115 2147 862 11341 1655 2946 14623 341 6816 1298 337 504 2985 7098 1775 2743 6454 3260 5254 3953 4870 4196 4073 4735 5610 4013 4683 4894 5014 4919 4901 4715 4677 4760 4491 ]
C [ 4697 5425 4054 3845 3422 4558 6889 6119 5596 5168 4812 4554 4858 5993 3975 2280 13242 16872 1436 9522 6839 554 111 151 637 97 863 13186 1218 9697 6084 4465 3854 3559 3514 4882 5813 6748 5828 4151 5004 4373 4186 4377 4358 4445 4768 4677 4514 4753 ]
G [ 5808 3732 4405 4346 4327 4199 3368 3581 4130 4332 4364 3873 4566 3145 5826 7673 1698 522 2732 6645 1817 1905 17969 11398 10349 17913 15700 767 9078 4983 1783 5322 4747 4064 7605 4832 4832 3131 3247 4797 5011 5033 5012 4436 4488 4978 4912 4839 4754 4841 ]
T [ 4280 4457 4023 5757 7244 5462 4655 4890 4369 4401 4806 5435 4937 6568 4669 3511 1492 323 3070 757 6977 1497 158 214 6295 232 1512 1641 1185 2124 7969 2338 6718 5702 3507 3995 3738 4627 4769 4021 4551 4490 4487 4752 4814 4255 4184 4386 4551 4494 ]

Hypothetical CWM

   
A [ 0.00 -0.00 -0.02 -0.02 0.02 -0.01 -0.03 0.03 -0.02 -0.02 0.07 -0.05 0.05 -0.06 -0.04 -0.05 -0.02 0.02 -0.02 -0.02 0.03 -0.02 0.01 -0.01 0.00 ]
C [ 0.00 0.01 0.04 0.02 -0.01 0.09 0.14 -0.02 0.10 0.04 -0.00 -0.03 -0.05 -0.01 -0.04 -0.03 0.12 -0.02 0.06 0.04 0.03 0.01 0.01 0.01 0.02 ]
G [ 0.01 0.01 -0.00 0.03 0.04 -0.02 -0.02 0.06 0.04 -0.01 0.02 0.15 0.11 0.09 0.14 0.11 -0.03 0.11 0.03 -0.01 0.02 0.02 -0.00 0.03 0.01 ]
T [ 0.01 0.00 0.01 -0.01 -0.02 -0.02 -0.06 -0.02 -0.05 0.05 -0.03 -0.04 -0.07 0.03 -0.04 0.00 -0.02 -0.06 -0.02 0.03 -0.04 0.02 0.01 -0.01 -0.01 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_5

Num. of seqlets: 36

CWM

PFM

     

HCWM

447 profiles found for the same TF (CTCF) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000001.1 CTCF ENCSR000AHD MCF-7 Homo sapiens MA0139.2
BP000002.1 CTCF ENCSR000AKB GM12878 Homo sapiens MA0139.2
BP000003.1 CTCF ENCSR000AKO K562 Homo sapiens MA0139.2
BP000004.1 CTCF ENCSR000ALA endothelial cell of umbilical vein Homo sapiens MA0139.2
BP000005.1 CTCF ENCSR000ALJ keratinocyte Homo sapiens MA0139.2
BP000006.1 CTCF ENCSR000ALV mammary epithelial cell Homo sapiens MA0139.2
BP000007.1 CTCF ENCSR000AMA HepG2 Homo sapiens MA0139.2
BP000008.1 CTCF ENCSR000AMF H1 Homo sapiens MA0139.2
BP000009.1 CTCF ENCSR000ANE skeletal muscle myoblast Homo sapiens MA0139.2
BP000010.1 CTCF ENCSR000ANO fibroblast of lung Homo sapiens MA0139.2
Showing 10 profiles of page 1 from 45 pages