Detailed information of deep learning profile BP000261.1

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This page shows detailed deep learning-derived predictions and motifs for CTCF in KMS-11 using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: CTCF
Model ID: BP000261.1
Cell line/tissue: KMS-11
Class: C2H2 zinc finger factors
Family: More than 3 adjacent zinc fingers
JASPAR ID: MA0139.2
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: P49711  
Source: ENCSR430YRJ
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ 0.01 -0.00 0.01 -0.00 -0.00 -0.00 -0.00 -0.00 0.01 -0.00 -0.00 -0.00 0.02 -0.00 -0.00 -0.00 -0.00 -0.00 -0.00 0.01 0.00 ]
C [ 0.00 0.00 -0.00 0.01 0.05 -0.00 0.11 0.15 0.05 0.07 0.17 0.00 -0.00 0.01 0.01 -0.00 -0.00 0.02 0.01 -0.00 0.00 ]
G [ 0.00 0.00 0.01 0.03 0.00 0.09 0.00 -0.00 -0.00 -0.00 -0.00 -0.00 0.01 0.05 0.00 0.16 0.09 -0.00 0.00 0.01 0.00 ]
T [ -0.00 0.01 -0.00 -0.00 0.01 -0.00 -0.00 -0.00 -0.00 0.01 -0.00 0.08 -0.00 -0.00 0.03 -0.00 -0.00 0.00 -0.00 -0.00 -0.00 ]

Frequency matrix

       
A [ 3825 3688 3841 4188 4249 3955 3990 4067 3537 4180 4028 3292 3498 3021 4895 5764 2261 6624 2109 1218 1620 1448 373 4859 278 147 1262 6138 661 2883 307 1162 3026 3918 5855 4271 4776 4233 3867 3790 4267 3948 5012 6962 5274 3456 3927 3722 4704 4787 ]
C [ 4348 4470 4355 3984 3921 4433 4505 4415 4260 3215 3007 4489 4385 6674 3753 4276 4795 1960 4385 7902 1031 13330 15651 9800 10764 16022 1566 1567 5901 2403 375 1338 6931 5235 2703 3994 3535 3796 3879 3610 3041 2681 3803 3644 3823 3870 3082 5651 5633 4194 ]
G [ 4198 4183 4023 4028 3937 3800 3945 4398 3786 4869 5703 4920 4259 3268 3265 3490 3914 5306 8173 1494 11114 1067 175 604 131 91 478 6226 8407 1325 15120 12263 2029 3759 5406 4482 3998 4283 4758 5082 5832 6749 4007 2791 3280 3549 5170 4112 2931 3887 ]
T [ 4152 4182 4304 4323 4416 4335 4083 3643 4940 4259 3785 3822 4381 3560 4610 2993 5553 2633 1856 5909 2758 678 324 1260 5350 263 13217 2592 1554 9912 721 1760 4537 3611 2559 3776 4214 4211 4019 4041 3383 3145 3701 3126 4146 5648 4344 3038 3255 3655 ]

Hypothetical CWM

   
A [ -0.00 -0.01 0.01 0.02 -0.03 0.03 -0.01 -0.06 -0.03 0.00 -0.04 0.03 -0.07 -0.04 -0.02 0.06 -0.06 -0.02 -0.06 -0.03 -0.01 -0.00 0.02 0.01 0.01 0.00 0.00 ]
C [ 0.01 0.03 -0.00 0.01 0.02 -0.01 0.03 0.11 -0.03 0.12 0.16 0.10 0.12 0.17 0.02 -0.01 0.05 0.06 -0.02 -0.02 0.05 0.04 -0.00 0.01 0.01 0.01 0.00 ]
G [ 0.01 0.01 0.00 0.01 0.02 0.04 0.06 -0.02 0.12 -0.04 -0.03 -0.01 -0.07 -0.03 -0.00 0.05 0.10 -0.02 0.17 0.11 -0.01 0.03 0.04 0.02 0.01 0.01 0.02 ]
T [ 0.00 -0.00 0.01 -0.01 0.03 -0.02 -0.02 0.02 -0.01 -0.05 -0.05 -0.06 0.04 -0.05 0.09 -0.01 -0.01 0.04 -0.03 -0.01 0.02 -0.02 -0.02 0.00 0.01 0.01 0.00 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_1

Num. of seqlets: 537

CWM

PFM

     

HCWM

447 profiles found for the same TF (CTCF) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000001.1 CTCF ENCSR000AHD MCF-7 Homo sapiens MA0139.2
BP000002.1 CTCF ENCSR000AKB GM12878 Homo sapiens MA0139.2
BP000003.1 CTCF ENCSR000AKO K562 Homo sapiens MA0139.2
BP000004.1 CTCF ENCSR000ALA endothelial cell of umbilical vein Homo sapiens MA0139.2
BP000005.1 CTCF ENCSR000ALJ keratinocyte Homo sapiens MA0139.2
BP000006.1 CTCF ENCSR000ALV mammary epithelial cell Homo sapiens MA0139.2
BP000007.1 CTCF ENCSR000AMA HepG2 Homo sapiens MA0139.2
BP000008.1 CTCF ENCSR000AMF H1 Homo sapiens MA0139.2
BP000009.1 CTCF ENCSR000ANE skeletal muscle myoblast Homo sapiens MA0139.2
BP000010.1 CTCF ENCSR000ANO fibroblast of lung Homo sapiens MA0139.2
Showing 10 profiles of page 1 from 45 pages