Detailed information of deep learning profile BP000260.1

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This page shows detailed deep learning-derived predictions and motifs for CTCF in lower leg skin using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: CTCF
Model ID: BP000260.1
Cell line/tissue: lower leg skin
Class: C2H2 zinc finger factors
Family: More than 3 adjacent zinc fingers
JASPAR ID: MA0139.2
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: P49711  
Source: ENCSR430TEE
Model: BPNet
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Sequence logo

 

Contribution weight matrix (CWM)

 
A [ 0.00 -0.00 0.00 -0.00 -0.00 0.00 -0.00 -0.00 0.00 0.00 -0.00 -0.00 0.00 -0.00 -0.00 -0.00 -0.00 -0.00 0.00 0.00 -0.00 0.00 ]
C [ 0.00 0.00 -0.00 0.00 0.02 -0.00 0.02 0.04 0.01 0.01 0.02 -0.00 -0.00 -0.00 0.00 0.00 -0.00 0.01 0.00 -0.00 0.00 -0.00 ]
G [ 0.00 0.00 0.00 0.00 -0.00 0.02 -0.00 0.00 0.00 0.00 -0.00 -0.00 0.01 0.02 -0.00 0.04 0.02 -0.00 0.00 0.00 -0.00 -0.00 ]
T [ -0.00 0.00 -0.00 0.00 0.00 -0.00 -0.00 -0.00 -0.00 -0.00 -0.00 0.02 -0.00 -0.00 0.01 -0.00 -0.00 0.00 -0.00 -0.00 0.00 0.00 ]

Frequency matrix

       
A [ 217 184 221 265 245 231 217 206 171 231 194 183 166 151 262 264 97 376 78 49 83 81 8 345 48 19 80 264 31 95 10 54 150 208 434 242 310 224 220 179 234 218 298 484 326 150 182 175 283 276 ]
C [ 333 365 383 317 290 334 358 345 387 220 175 291 348 555 323 391 357 143 361 702 42 878 1076 626 669 1056 90 103 312 279 24 69 632 482 146 355 253 308 253 283 218 190 328 305 307 347 199 530 436 315 ]
G [ 343 344 337 320 320 321 319 399 247 432 572 437 397 241 255 327 296 462 592 42 902 87 19 94 85 34 61 646 734 73 1074 927 105 259 451 258 302 375 424 438 524 597 306 195 244 274 477 310 260 353 ]
T [ 239 239 191 230 277 246 238 182 327 249 191 221 221 185 292 150 382 151 101 339 105 86 29 67 330 23 901 119 55 685 24 82 245 183 101 277 267 225 235 232 156 127 200 148 255 361 274 117 153 188 ]

Hypothetical CWM

   
A [ -0.01 -0.00 -0.00 -0.01 0.01 -0.01 -0.02 -0.00 -0.01 -0.02 0.00 -0.01 -0.02 -0.01 0.01 -0.02 -0.02 -0.02 -0.01 -0.01 -0.00 0.01 -0.01 0.00 -0.00 -0.00 ]
C [ 0.00 -0.00 0.00 0.00 -0.01 0.00 0.02 -0.02 0.02 0.04 0.01 0.01 0.02 -0.01 -0.01 -0.00 0.01 -0.02 -0.01 0.02 0.00 -0.01 0.00 -0.00 -0.00 -0.01 ]
G [ -0.00 -0.00 0.00 -0.00 0.00 0.01 -0.01 0.03 -0.01 -0.02 -0.00 -0.00 -0.01 -0.01 0.01 0.02 -0.01 0.04 0.03 -0.01 0.01 0.01 -0.01 -0.00 0.00 0.01 ]
T [ -0.00 -0.00 -0.01 0.01 -0.01 -0.00 0.00 -0.02 -0.01 -0.01 -0.02 -0.00 -0.01 0.02 -0.01 -0.01 0.01 -0.02 -0.02 0.00 -0.02 -0.01 0.00 -0.00 -0.00 -0.00 ]

447 profiles found for the same TF (CTCF) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000001.1 CTCF ENCSR000AHD MCF-7 Homo sapiens MA0139.2
BP000002.1 CTCF ENCSR000AKB GM12878 Homo sapiens MA0139.2
BP000003.1 CTCF ENCSR000AKO K562 Homo sapiens MA0139.2
BP000004.1 CTCF ENCSR000ALA endothelial cell of umbilical vein Homo sapiens MA0139.2
BP000005.1 CTCF ENCSR000ALJ keratinocyte Homo sapiens MA0139.2
BP000006.1 CTCF ENCSR000ALV mammary epithelial cell Homo sapiens MA0139.2
BP000007.1 CTCF ENCSR000AMA HepG2 Homo sapiens MA0139.2
BP000008.1 CTCF ENCSR000AMF H1 Homo sapiens MA0139.2
BP000009.1 CTCF ENCSR000ANE skeletal muscle myoblast Homo sapiens MA0139.2
BP000010.1 CTCF ENCSR000ANO fibroblast of lung Homo sapiens MA0139.2
Showing 10 profiles of page 1 from 45 pages