Detailed information of deep learning profile BP000259.1

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This page shows detailed deep learning-derived predictions and motifs for CTCF in gastrocnemius medialis using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: CTCF
Model ID: BP000259.1
Cell line/tissue: gastrocnemius medialis
Class: C2H2 zinc finger factors
Family: More than 3 adjacent zinc fingers
JASPAR ID: MA0139.2
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: P49711  
Source: ENCSR428BKN
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ -0.00 0.01 -0.00 -0.00 -0.00 0.00 -0.00 0.01 0.00 -0.00 0.00 0.02 -0.00 -0.01 0.00 -0.00 -0.00 -0.00 0.01 0.00 ]
C [ 0.00 0.00 0.02 0.05 0.01 0.13 0.14 0.06 0.10 0.14 0.00 -0.00 0.01 0.01 -0.00 0.00 0.02 0.01 -0.00 0.00 ]
G [ 0.01 0.02 0.02 0.01 0.09 0.00 -0.00 -0.00 0.00 -0.00 0.00 0.03 0.06 0.03 0.17 0.09 -0.01 0.00 0.01 0.00 ]
T [ 0.01 -0.00 -0.00 0.01 -0.00 0.00 -0.00 0.00 0.01 0.01 0.08 -0.01 0.01 0.03 -0.00 -0.00 0.00 -0.01 -0.00 -0.00 ]

Frequency matrix

       
A [ 10 18 4 3 4 3 5 15 0 1 4 22 1 6 0 4 7 18 26 14 14 16 11 15 10 10 17 12 18 15 7 5 21 15 3 9 15 16 8 9 10 9 11 13 10 11 13 11 17 6 ]
C [ 13 7 20 26 6 51 45 33 41 44 4 2 19 11 1 4 23 13 5 10 13 11 17 16 17 11 14 16 17 15 2 40 21 7 22 27 14 13 23 26 14 17 25 17 18 20 13 21 16 21 ]
G [ 18 24 22 9 40 2 4 5 0 3 7 24 29 9 52 42 12 13 20 18 18 19 17 15 21 22 12 17 17 7 44 6 6 26 26 11 15 19 19 9 24 17 11 15 21 18 20 18 17 17 ]
T [ 15 7 10 18 6 0 2 3 15 8 41 8 7 30 3 6 14 12 5 14 11 10 11 10 8 13 13 11 4 19 3 5 8 8 5 9 12 8 6 12 8 13 9 11 7 7 10 6 6 12 ]

Hypothetical CWM

   
A [ -0.03 0.03 -0.02 -0.06 -0.03 -0.01 -0.03 0.02 -0.07 -0.04 -0.02 0.04 -0.06 -0.04 -0.08 -0.04 -0.01 0.00 0.02 0.01 0.02 ]
C [ 0.02 -0.01 0.05 0.10 -0.01 0.13 0.16 0.10 0.14 0.16 0.01 -0.01 0.05 0.06 -0.04 -0.02 0.06 0.03 -0.00 0.01 0.01 ]
G [ 0.02 0.04 0.05 -0.01 0.10 -0.04 -0.05 -0.02 -0.07 -0.02 0.00 0.07 0.10 -0.00 0.18 0.10 -0.01 0.03 0.04 0.01 0.01 ]
T [ 0.03 -0.01 -0.01 0.03 -0.02 -0.05 -0.06 -0.05 0.05 -0.03 0.08 -0.02 -0.02 0.03 -0.03 -0.00 0.02 -0.02 -0.01 0.01 0.01 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_0

Num. of seqlets: 17401

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_2

Num. of seqlets: 384

CWM

PFM

     

HCWM

447 profiles found for the same TF (CTCF) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000011.1 CTCF ENCSR000ANS myotube Homo sapiens MA0139.2
BP000012.1 CTCF ENCSR000AOA HeLa-S3 Homo sapiens MA0139.2
BP000013.1 CTCF ENCSR000AOO astrocyte Homo sapiens MA0139.2
BP000014.1 CTCF ENCSR000APF osteoblast Homo sapiens MA0139.2
BP000015.1 CTCF ENCSR000APM fibroblast of dermis Homo sapiens MA0139.2
BP000016.1 CTCF ENCSR000AQU DND-41 Homo sapiens MA0139.2
BP000017.1 CTCF ENCSR000ATN CD14-positive monocyte Homo sapiens MA0139.2
BP000018.1 CTCF ENCSR000AUE A549 Homo sapiens MA0139.2
BP000019.1 CTCF ENCSR000AUF A549 Homo sapiens MA0139.2
BP000020.1 CTCF ENCSR000AUV B cell Homo sapiens MA0139.2
Showing 10 profiles of page 2 from 45 pages