Detailed information of deep learning profile BP000258.1

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This page shows detailed deep learning-derived predictions and motifs for CTCF in middle frontal area 46 using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: CTCF
Model ID: BP000258.1
Cell line/tissue: middle frontal area 46
Class: C2H2 zinc finger factors
Family: More than 3 adjacent zinc fingers
JASPAR ID: MA0139.2
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: P49711  
Source: ENCSR423ZUM
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ -0.00 -0.00 -0.01 0.00 -0.00 -0.00 0.02 -0.00 -0.01 0.07 -0.00 0.02 -0.00 -0.00 -0.00 -0.00 0.01 -0.00 -0.00 0.01 -0.00 ]
C [ 0.00 0.01 0.01 -0.00 0.10 0.19 -0.00 0.07 0.02 0.00 -0.00 -0.00 0.00 0.00 0.00 0.10 -0.00 0.03 0.01 0.00 0.00 ]
G [ 0.00 -0.00 0.01 0.02 -0.00 -0.00 0.01 0.01 -0.00 0.00 0.20 0.08 0.06 0.19 0.12 -0.00 0.06 0.01 -0.00 0.01 0.00 ]
T [ 0.00 0.01 -0.00 -0.01 -0.00 -0.00 -0.01 -0.00 0.02 -0.00 -0.00 -0.00 0.01 -0.00 -0.00 -0.00 -0.00 -0.00 0.01 -0.00 0.01 ]

Frequency matrix

       
A [ 4313 3871 3757 5022 6269 4656 3733 4319 3678 4040 4599 4655 4804 4924 4265 2894 4320 5017 2106 668 11960 1523 3219 14850 333 7161 1351 340 563 2901 7568 1869 2836 6641 3348 5431 4212 4724 4326 4131 4858 5879 3993 4842 5070 5327 5040 4889 4855 4909 ]
C [ 4553 3641 4854 5657 4166 3919 3530 4746 7161 6377 5629 5216 4912 4547 4930 6192 4102 2383 13833 17824 1248 9838 6748 610 82 169 828 122 961 13632 1158 9275 6259 4544 3999 3704 3517 5032 6172 6978 5884 4016 5238 4525 4378 4350 4484 4599 4814 4849 ]
G [ 4818 6249 6041 3817 4570 4578 4352 4472 3381 3668 4380 4584 4477 4034 4807 3111 6046 8168 1595 286 2941 6904 1787 1998 18446 11462 10582 18275 15866 827 9142 5644 2177 5532 4903 4170 7757 5189 4722 3064 3373 5061 5099 5168 5053 4430 4398 5112 5119 4984 ]
T [ 5341 5264 4373 4529 4020 5872 7410 5488 4805 4940 4417 4570 4832 5520 5023 6828 4557 3457 1491 247 2876 760 7271 1567 164 233 6264 288 1635 1665 1157 2237 7753 2308 6775 5720 3539 4080 3805 4852 4910 4069 4695 4490 4524 4918 5103 4425 4237 4283 ]

Hypothetical CWM

   
A [ 0.00 0.01 0.00 -0.00 -0.02 -0.02 0.02 -0.01 -0.03 0.04 -0.03 -0.02 0.09 -0.05 0.05 -0.07 -0.05 -0.06 -0.02 0.02 -0.02 -0.02 0.03 -0.02 0.01 -0.00 0.00 ]
C [ 0.02 0.02 0.01 0.03 0.06 0.05 -0.00 0.13 0.20 -0.00 0.13 0.07 0.01 -0.01 -0.05 0.02 -0.03 -0.02 0.15 -0.02 0.07 0.05 0.03 0.02 0.01 0.01 0.02 ]
G [ 0.01 0.02 0.02 0.02 0.01 0.05 0.07 -0.02 -0.02 0.09 0.06 -0.01 0.04 0.20 0.15 0.12 0.19 0.15 -0.02 0.15 0.06 -0.00 0.04 0.02 0.00 0.04 0.02 ]
T [ 0.00 0.00 0.01 0.01 0.02 -0.01 -0.02 -0.03 -0.07 -0.04 -0.06 0.06 -0.03 -0.05 -0.08 0.03 -0.04 0.01 -0.03 -0.07 -0.01 0.03 -0.04 0.03 0.01 -0.01 -0.01 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_1

Num. of seqlets: 3653

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_2

Num. of seqlets: 602

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_3

Num. of seqlets: 532

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_5

Num. of seqlets: 240

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_6

Num. of seqlets: 204

CWM

PFM

     

HCWM

447 profiles found for the same TF (CTCF) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000001.1 CTCF ENCSR000AHD MCF-7 Homo sapiens MA0139.2
BP000002.1 CTCF ENCSR000AKB GM12878 Homo sapiens MA0139.2
BP000003.1 CTCF ENCSR000AKO K562 Homo sapiens MA0139.2
BP000004.1 CTCF ENCSR000ALA endothelial cell of umbilical vein Homo sapiens MA0139.2
BP000005.1 CTCF ENCSR000ALJ keratinocyte Homo sapiens MA0139.2
BP000006.1 CTCF ENCSR000ALV mammary epithelial cell Homo sapiens MA0139.2
BP000007.1 CTCF ENCSR000AMA HepG2 Homo sapiens MA0139.2
BP000008.1 CTCF ENCSR000AMF H1 Homo sapiens MA0139.2
BP000009.1 CTCF ENCSR000ANE skeletal muscle myoblast Homo sapiens MA0139.2
BP000010.1 CTCF ENCSR000ANO fibroblast of lung Homo sapiens MA0139.2
Showing 10 profiles of page 1 from 45 pages