Detailed information of deep learning profile BP000257.1

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This page shows detailed deep learning-derived predictions and motifs for CTCF in brain using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: CTCF
Model ID: BP000257.1
Cell line/tissue: brain
Class: C2H2 zinc finger factors
Family: More than 3 adjacent zinc fingers
JASPAR ID: MA0139.2
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: P49711  
Source: ENCSR423MQG
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ -0.00 -0.00 0.04 -0.00 -0.00 0.12 0.00 0.03 0.00 0.00 0.00 -0.01 0.01 0.00 -0.00 0.02 -0.01 ]
C [ 0.14 0.25 0.01 0.10 0.04 0.00 0.00 0.00 0.00 0.00 0.00 0.12 -0.00 0.06 0.01 0.01 0.00 ]
G [ 0.00 0.00 0.02 0.01 -0.00 -0.00 0.25 0.11 0.08 0.25 0.18 -0.00 0.12 0.02 -0.01 0.00 -0.00 ]
T [ -0.01 0.00 -0.01 0.00 0.03 0.01 0.00 0.00 0.01 -0.00 -0.00 -0.00 0.00 -0.00 0.02 -0.00 0.02 ]

Frequency matrix

       
A [ 2 1 21 2 2 26 1 12 0 0 0 7 9 0 2 14 9 7 5 7 5 6 4 3 4 6 4 4 9 4 7 7 3 5 3 6 2 4 10 6 9 10 10 5 9 7 8 3 8 5 ]
C [ 27 32 2 21 13 1 0 0 0 0 0 22 1 23 9 8 1 6 5 5 7 7 3 5 1 3 0 1 2 10 5 6 1 3 3 7 11 11 9 7 5 4 2 4 9 9 6 8 7 10 ]
G [ 1 0 7 10 3 4 32 21 21 32 29 1 23 9 4 9 10 17 18 15 18 14 18 22 27 20 25 21 19 17 19 17 20 22 20 16 10 9 7 13 11 9 19 20 10 9 13 11 8 13 ]
T [ 3 0 3 0 15 2 0 0 12 1 4 3 0 1 18 2 13 3 5 6 3 6 8 3 1 4 4 7 3 2 2 3 9 3 7 4 10 9 7 7 8 10 2 4 5 8 6 11 10 5 ]

Hypothetical CWM

   
A [ -0.01 -0.05 0.07 -0.04 -0.01 0.15 -0.06 0.09 -0.10 -0.07 -0.08 -0.02 0.04 -0.03 -0.02 0.04 -0.03 0.03 -0.01 0.01 ]
C [ 0.17 0.26 -0.02 0.16 0.09 0.01 -0.05 -0.11 0.01 -0.08 -0.06 0.20 -0.02 0.10 0.06 0.06 0.03 0.02 0.02 0.03 ]
G [ -0.04 -0.04 0.11 0.06 -0.02 0.02 0.25 0.19 0.13 0.26 0.20 -0.04 0.18 0.05 -0.02 0.04 0.02 -0.02 0.04 0.01 ]
T [ -0.05 -0.11 -0.04 -0.08 0.08 -0.03 -0.06 -0.12 0.04 -0.07 0.00 -0.03 -0.09 -0.02 0.05 -0.06 0.04 0.02 -0.01 -0.01 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_0

Num. of seqlets: 18766

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_2

Num. of seqlets: 133

CWM

PFM

     

HCWM

447 profiles found for the same TF (CTCF) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000011.1 CTCF ENCSR000ANS myotube Homo sapiens MA0139.2
BP000012.1 CTCF ENCSR000AOA HeLa-S3 Homo sapiens MA0139.2
BP000013.1 CTCF ENCSR000AOO astrocyte Homo sapiens MA0139.2
BP000014.1 CTCF ENCSR000APF osteoblast Homo sapiens MA0139.2
BP000015.1 CTCF ENCSR000APM fibroblast of dermis Homo sapiens MA0139.2
BP000016.1 CTCF ENCSR000AQU DND-41 Homo sapiens MA0139.2
BP000017.1 CTCF ENCSR000ATN CD14-positive monocyte Homo sapiens MA0139.2
BP000018.1 CTCF ENCSR000AUE A549 Homo sapiens MA0139.2
BP000019.1 CTCF ENCSR000AUF A549 Homo sapiens MA0139.2
BP000020.1 CTCF ENCSR000AUV B cell Homo sapiens MA0139.2
Showing 10 profiles of page 2 from 45 pages