Detailed information of deep learning profile BP000256.1

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This page shows detailed deep learning-derived predictions and motifs for CTCF in Peyer's patch using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: CTCF
Model ID: BP000256.1
Cell line/tissue: Peyer's patch
Class: C2H2 zinc finger factors
Family: More than 3 adjacent zinc fingers
JASPAR ID: MA0139.2
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: P49711  
Source: ENCSR419ANE
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ 0.01 -0.00 0.01 -0.00 -0.00 -0.00 -0.00 -0.00 0.01 -0.00 -0.00 -0.00 0.02 -0.00 -0.00 -0.00 -0.00 -0.00 -0.00 0.01 0.00 ]
C [ 0.00 0.00 -0.00 0.01 0.04 -0.00 0.08 0.12 0.04 0.05 0.14 0.00 -0.00 0.01 0.00 -0.00 -0.00 0.01 0.01 -0.00 0.00 ]
G [ -0.00 0.00 0.01 0.02 -0.00 0.06 0.00 0.00 -0.00 -0.00 -0.00 -0.00 0.01 0.05 -0.00 0.14 0.07 -0.00 0.00 0.01 0.00 ]
T [ -0.00 0.01 -0.00 -0.00 0.01 -0.00 -0.00 -0.00 -0.00 0.01 -0.00 0.06 -0.00 -0.00 0.02 -0.00 -0.00 0.00 -0.00 -0.00 -0.00 ]

Frequency matrix

       
A [ 4098 3963 4025 4685 4596 4273 4282 4345 3913 4468 4376 3648 3833 3456 5170 5838 2516 6944 2263 1352 1841 1566 275 5817 303 161 1282 6520 647 3035 179 1236 3278 4354 6336 4748 5376 4555 4282 4189 4595 4361 5116 7078 5507 3640 4067 4063 4908 4989 ]
C [ 4658 4829 4869 4277 4163 4683 4896 4786 4740 3444 3246 4542 4845 7014 4025 4850 5240 2388 5359 8201 1097 14153 17129 9452 10922 17359 1952 1609 6410 2751 175 1222 7543 5649 2795 4336 3619 4080 4204 4024 3414 3080 4201 4073 4285 4204 3539 5638 5844 4514 ]
G [ 4564 4522 4350 4233 4293 4189 4255 4782 3918 5339 6212 5583 4659 3430 3554 3779 4048 5553 8106 1610 11539 1337 122 940 234 89 460 6896 9527 1038 16914 13581 2176 3869 5990 4802 4316 4730 4861 5427 6055 6919 4467 3155 3740 3969 5404 4563 3455 4257 ]
T [ 4540 4546 4616 4665 4808 4715 4427 3947 5289 4609 4026 4087 4523 3960 5111 3393 6056 2975 2132 6697 3383 804 334 1651 6401 251 14166 2835 1276 11036 592 1821 4863 3988 2739 3974 4549 4495 4513 4220 3796 3500 4076 3554 4328 6047 4850 3596 3653 4100 ]

Hypothetical CWM

   
A [ -0.00 -0.01 0.01 0.02 -0.03 0.02 -0.01 -0.05 -0.02 -0.00 -0.03 0.02 -0.06 -0.04 -0.03 0.05 -0.05 -0.02 -0.07 -0.03 -0.02 -0.00 0.02 0.01 0.01 0.00 0.00 ]
C [ 0.01 0.03 0.00 0.02 0.02 -0.01 0.03 0.09 -0.02 0.09 0.12 0.07 0.10 0.14 0.01 -0.02 0.03 0.05 -0.03 -0.03 0.04 0.02 -0.01 0.01 0.00 0.01 0.00 ]
G [ 0.01 0.00 0.01 0.00 0.01 0.03 0.04 -0.02 0.09 -0.03 -0.03 -0.00 -0.06 -0.03 -0.02 0.04 0.09 -0.02 0.14 0.10 -0.01 0.02 0.04 0.02 0.01 0.01 0.02 ]
T [ 0.00 -0.00 0.01 -0.01 0.02 -0.02 -0.02 0.02 -0.01 -0.04 -0.04 -0.05 0.03 -0.05 0.07 -0.02 -0.02 0.03 -0.02 -0.01 0.02 -0.01 -0.02 0.00 0.00 0.00 0.00 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_1

Num. of seqlets: 2766

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_3

Num. of seqlets: 382

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_4

Num. of seqlets: 327

CWM

PFM

     

HCWM

447 profiles found for the same TF (CTCF) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000001.1 CTCF ENCSR000AHD MCF-7 Homo sapiens MA0139.2
BP000002.1 CTCF ENCSR000AKB GM12878 Homo sapiens MA0139.2
BP000003.1 CTCF ENCSR000AKO K562 Homo sapiens MA0139.2
BP000004.1 CTCF ENCSR000ALA endothelial cell of umbilical vein Homo sapiens MA0139.2
BP000005.1 CTCF ENCSR000ALJ keratinocyte Homo sapiens MA0139.2
BP000006.1 CTCF ENCSR000ALV mammary epithelial cell Homo sapiens MA0139.2
BP000007.1 CTCF ENCSR000AMA HepG2 Homo sapiens MA0139.2
BP000008.1 CTCF ENCSR000AMF H1 Homo sapiens MA0139.2
BP000009.1 CTCF ENCSR000ANE skeletal muscle myoblast Homo sapiens MA0139.2
BP000010.1 CTCF ENCSR000ANO fibroblast of lung Homo sapiens MA0139.2
Showing 10 profiles of page 1 from 45 pages