Detailed information of deep learning profile BP000255.1

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This page shows detailed deep learning-derived predictions and motifs for CTCF in A549 using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: CTCF
Model ID: BP000255.1
Cell line/tissue: A549
Class: C2H2 zinc finger factors
Family: More than 3 adjacent zinc fingers
JASPAR ID: MA0139.2
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: P49711  
Source: ENCSR414CQB
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ 0.01 -0.00 0.01 -0.00 -0.00 -0.00 0.00 -0.00 0.01 -0.00 -0.00 -0.00 0.02 -0.00 -0.00 -0.00 -0.00 -0.00 -0.00 0.00 0.00 ]
C [ 0.00 0.01 -0.00 0.01 0.05 -0.00 0.10 0.15 0.05 0.06 0.16 0.00 -0.00 0.01 0.00 -0.00 -0.00 0.02 0.01 -0.00 0.00 ]
G [ 0.00 0.01 0.01 0.03 -0.00 0.09 -0.00 -0.00 -0.00 -0.00 -0.00 -0.00 0.01 0.05 -0.00 0.15 0.07 -0.00 0.00 0.01 0.00 ]
T [ -0.00 0.01 -0.00 -0.00 0.01 -0.00 -0.00 -0.00 -0.00 0.02 -0.00 0.07 -0.00 -0.00 0.02 -0.00 -0.00 0.00 -0.00 -0.00 -0.00 ]

Frequency matrix

       
A [ 4369 4386 4289 4098 4212 4734 4709 4431 4459 4492 4052 4775 4624 3737 4004 3492 5641 6690 2317 8000 2063 1176 1628 1489 279 6311 220 191 1569 6660 801 3196 346 1539 3506 4643 6329 4844 5201 4705 4353 4317 4799 4600 5235 7125 5553 4030 4456 4224 ]
C [ 4735 4692 4864 4910 4809 4423 4321 4886 4868 4917 4680 3273 3172 4727 4766 7447 3925 4622 5328 1699 4819 9070 636 15717 17598 9818 11378 17636 2083 1903 6880 2507 529 1708 7494 5673 3090 4456 3943 4335 4465 4102 3615 3434 4268 4203 4300 4348 3703 5734 ]
G [ 4671 4535 4564 4637 4483 4385 4340 4216 4361 4940 4114 5655 6496 5628 4778 3499 3557 3819 4295 5992 9665 1070 13161 669 109 705 182 111 588 6627 8922 1429 16682 12865 2382 3884 5899 4783 4559 4767 5017 5440 5893 6665 4531 3396 3927 3982 5301 4592 ]
T [ 4553 4715 4611 4683 4824 4786 4958 4795 4640 3979 5482 4625 4036 4236 4780 3890 5205 3197 6388 2637 1781 7012 2903 453 342 1494 6548 390 14088 3138 1725 11196 771 2216 4946 4128 3010 4245 4625 4521 4493 4469 4021 3629 4294 3604 4548 5968 4868 3778 ]

Hypothetical CWM

   
A [ -0.01 -0.01 0.01 0.03 -0.04 0.03 -0.01 -0.06 -0.02 0.01 -0.04 0.03 -0.07 -0.03 -0.03 0.05 -0.05 -0.02 -0.06 -0.03 -0.01 -0.00 0.01 0.01 0.01 ]
C [ 0.01 0.03 -0.00 0.02 0.02 -0.01 0.03 0.12 -0.03 0.12 0.15 0.09 0.11 0.16 0.02 -0.01 0.04 0.06 -0.03 -0.02 0.04 0.03 -0.00 0.01 0.01 ]
G [ 0.02 0.01 0.01 0.01 0.03 0.04 0.07 -0.02 0.13 -0.03 -0.04 -0.01 -0.05 -0.03 -0.00 0.04 0.10 -0.02 0.16 0.10 -0.01 0.03 0.04 0.01 0.01 ]
T [ 0.00 -0.00 0.01 -0.02 0.03 -0.02 -0.02 0.02 -0.02 -0.05 -0.04 -0.06 0.05 -0.05 0.08 -0.01 -0.02 0.03 -0.03 -0.01 0.02 -0.02 -0.02 0.00 0.00 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_1

Num. of seqlets: 899

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_2

Num. of seqlets: 541

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_3

Num. of seqlets: 197

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_4

Num. of seqlets: 188

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_5

Num. of seqlets: 177

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_6

Num. of seqlets: 113

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_7

Num. of seqlets: 101

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_11

Num. of seqlets: 21

CWM

PFM

     

HCWM

447 profiles found for the same TF (CTCF) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000001.1 CTCF ENCSR000AHD MCF-7 Homo sapiens MA0139.2
BP000002.1 CTCF ENCSR000AKB GM12878 Homo sapiens MA0139.2
BP000003.1 CTCF ENCSR000AKO K562 Homo sapiens MA0139.2
BP000004.1 CTCF ENCSR000ALA endothelial cell of umbilical vein Homo sapiens MA0139.2
BP000005.1 CTCF ENCSR000ALJ keratinocyte Homo sapiens MA0139.2
BP000006.1 CTCF ENCSR000ALV mammary epithelial cell Homo sapiens MA0139.2
BP000007.1 CTCF ENCSR000AMA HepG2 Homo sapiens MA0139.2
BP000008.1 CTCF ENCSR000AMF H1 Homo sapiens MA0139.2
BP000009.1 CTCF ENCSR000ANE skeletal muscle myoblast Homo sapiens MA0139.2
BP000010.1 CTCF ENCSR000ANO fibroblast of lung Homo sapiens MA0139.2
Showing 10 profiles of page 1 from 45 pages