Detailed information of deep learning profile BP000254.1

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This page shows detailed deep learning-derived predictions and motifs for CTCF in adrenal gland using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: CTCF
Model ID: BP000254.1
Cell line/tissue: adrenal gland
Class: C2H2 zinc finger factors
Family: More than 3 adjacent zinc fingers
JASPAR ID: MA0139.2
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: P49711  
Source: ENCSR408ZEE
Model: BPNet
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Sequence logo

 

Contribution weight matrix (CWM)

 
A [ 0.01 -0.00 0.01 -0.00 -0.00 -0.00 -0.00 -0.00 0.00 -0.00 -0.00 -0.00 0.02 -0.00 -0.00 -0.00 -0.00 -0.00 -0.00 0.01 0.00 ]
C [ 0.00 0.00 -0.00 0.01 0.04 -0.00 0.08 0.13 0.04 0.05 0.13 0.00 -0.00 0.01 0.01 -0.00 -0.00 0.02 0.01 -0.00 0.00 ]
G [ 0.00 0.00 0.01 0.02 -0.00 0.07 0.00 -0.00 -0.00 -0.00 -0.00 -0.00 0.01 0.05 -0.00 0.13 0.07 -0.00 0.00 0.01 0.00 ]
T [ -0.00 0.01 -0.00 -0.00 0.01 -0.00 -0.00 -0.00 -0.00 0.01 -0.00 0.06 -0.00 -0.00 0.02 -0.00 -0.00 0.00 -0.00 -0.00 -0.00 ]

Frequency matrix

       
A [ 4610 4414 4576 5594 5352 5012 4858 4974 4026 5158 5064 3960 4181 3665 5911 7053 2202 8311 2056 1098 1806 1654 274 7077 180 124 960 7887 561 2351 148 1274 3686 4786 7941 5424 6300 5154 4630 4505 5456 5044 6239 8990 6580 4036 4807 4528 5702 5863 ]
C [ 4959 4989 5195 4209 4055 4722 5096 5022 5078 2809 2630 4498 5083 8102 4027 5033 5294 1953 5784 8971 837 16304 18653 10804 10958 18979 1436 1291 6376 2541 133 1087 8312 6600 2769 4781 3706 4101 4327 4072 3096 2816 4079 3999 4403 4379 3217 6562 6734 4695 ]
G [ 4779 4726 4488 4236 4054 4204 4358 5278 3700 6184 7553 6365 5154 3241 3450 3734 4626 6391 9509 1119 13744 908 152 567 169 82 485 7157 11423 773 18722 15203 1866 3763 5941 4612 4116 4877 5436 5957 6770 7970 4498 2836 3445 3744 5919 4740 3136 4438 ]
T [ 5081 5300 5170 5390 5968 5491 5117 4155 6625 5278 4182 4606 5011 4421 6041 3609 7307 2774 2080 8241 3042 563 350 981 8122 244 16548 3094 1069 13764 426 1865 5565 4280 2778 4612 5307 5297 5036 4895 4107 3599 4613 3604 5001 7270 5486 3599 3857 4433 ]

Hypothetical CWM

   
A [ -0.01 -0.01 0.00 0.02 -0.03 0.02 -0.02 -0.05 -0.02 -0.00 -0.03 0.01 -0.06 -0.04 -0.04 0.04 -0.05 -0.02 -0.06 -0.03 -0.01 -0.00 0.02 0.01 0.01 0.00 0.00 ]
C [ 0.01 0.03 -0.00 0.02 0.02 -0.01 0.03 0.09 -0.02 0.09 0.13 0.08 0.10 0.13 0.02 -0.02 0.04 0.06 -0.02 -0.02 0.04 0.03 -0.00 0.01 0.01 0.01 0.00 ]
G [ 0.01 0.01 0.01 0.01 0.02 0.03 0.05 -0.02 0.10 -0.02 -0.03 0.00 -0.05 -0.01 -0.00 0.04 0.09 -0.02 0.13 0.09 -0.01 0.03 0.04 0.02 0.01 0.01 0.02 ]
T [ 0.00 -0.00 0.01 -0.01 0.02 -0.01 -0.02 0.01 -0.01 -0.04 -0.04 -0.05 0.03 -0.04 0.07 -0.02 -0.03 0.03 -0.03 -0.01 0.01 -0.02 -0.02 -0.00 0.00 0.00 -0.00 ]

447 profiles found for the same TF (CTCF) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000001.1 CTCF ENCSR000AHD MCF-7 Homo sapiens MA0139.2
BP000002.1 CTCF ENCSR000AKB GM12878 Homo sapiens MA0139.2
BP000003.1 CTCF ENCSR000AKO K562 Homo sapiens MA0139.2
BP000004.1 CTCF ENCSR000ALA endothelial cell of umbilical vein Homo sapiens MA0139.2
BP000005.1 CTCF ENCSR000ALJ keratinocyte Homo sapiens MA0139.2
BP000006.1 CTCF ENCSR000ALV mammary epithelial cell Homo sapiens MA0139.2
BP000007.1 CTCF ENCSR000AMA HepG2 Homo sapiens MA0139.2
BP000008.1 CTCF ENCSR000AMF H1 Homo sapiens MA0139.2
BP000009.1 CTCF ENCSR000ANE skeletal muscle myoblast Homo sapiens MA0139.2
BP000010.1 CTCF ENCSR000ANO fibroblast of lung Homo sapiens MA0139.2
Showing 10 profiles of page 1 from 45 pages