Detailed information of deep learning profile BP000253.1

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This page shows detailed deep learning-derived predictions and motifs for CTCF in body of pancreas using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: CTCF
Model ID: BP000253.1
Cell line/tissue: body of pancreas
Class: C2H2 zinc finger factors
Family: More than 3 adjacent zinc fingers
JASPAR ID: MA0139.2
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: P49711  
Source: ENCSR408XTO
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ -0.00 -0.00 -0.00 0.00 -0.00 -0.00 0.02 -0.00 -0.00 0.06 -0.00 0.01 -0.00 -0.00 -0.00 -0.00 0.01 -0.00 -0.00 0.01 -0.00 ]
C [ 0.00 0.01 0.00 -0.00 0.08 0.15 -0.00 0.05 0.02 -0.00 -0.00 -0.00 -0.00 -0.00 -0.00 0.07 -0.00 0.03 0.01 0.00 0.00 ]
G [ 0.00 -0.00 0.01 0.02 -0.00 -0.00 0.01 0.01 -0.00 0.00 0.15 0.06 0.04 0.14 0.09 -0.00 0.04 0.01 -0.00 0.00 0.00 ]
T [ 0.00 0.01 -0.00 -0.00 -0.00 -0.00 -0.00 -0.00 0.02 -0.00 -0.00 -0.00 0.01 -0.00 -0.00 -0.00 -0.00 -0.00 0.01 -0.00 0.01 ]

Frequency matrix

       
A [ 3461 4602 5622 4221 3366 3913 3390 3626 4114 4301 4249 4324 3822 2712 3833 4594 1940 941 10227 1444 2812 13249 295 5947 1488 353 430 2769 6592 1777 2543 5811 3083 4924 3707 4403 3826 3705 4300 5115 3674 4178 4535 4710 4346 4422 4310 4338 4330 4155 ]
C [ 4380 5116 3719 3505 3244 4148 6206 5626 5070 4606 4502 4158 4459 5394 3671 2180 12298 15533 1109 8438 6719 502 97 199 892 107 630 11818 1090 8172 5300 4002 3659 3328 3235 4338 5290 6065 5133 3699 4394 4003 3891 3893 4044 4159 4284 4189 4220 4351 ]
G [ 5304 3390 4039 4129 3865 4020 3075 3305 3827 4013 3917 3563 4133 2905 5288 6959 1466 268 2738 6386 1635 1854 16351 10572 8587 16199 14547 694 8122 5037 2053 4999 4476 3751 6875 4635 4412 2969 3139 4461 4670 4685 4410 4111 4143 4489 4555 4446 4338 4414 ]
T [ 3819 3856 3584 5109 6489 4883 4293 4407 3953 4044 4296 4919 4550 5953 4172 3231 1260 222 2890 696 5798 1359 221 246 5997 305 1357 1683 1160 1978 7068 2152 5746 4961 3147 3588 3436 4225 4392 3689 4226 4098 4128 4250 4431 3894 3815 3991 4076 4044 ]

Hypothetical CWM

   
A [ 0.00 -0.00 -0.02 -0.01 0.01 -0.01 -0.02 0.03 -0.02 -0.02 0.08 -0.04 0.04 -0.05 -0.05 -0.04 -0.01 0.02 -0.02 -0.02 0.02 -0.02 0.01 -0.00 0.00 ]
C [ 0.01 0.02 0.04 0.02 -0.02 0.10 0.15 -0.02 0.10 0.05 -0.01 -0.03 -0.06 0.00 -0.04 -0.03 0.11 -0.02 0.05 0.03 0.02 0.01 0.01 0.00 0.01 ]
G [ 0.00 0.01 -0.01 0.03 0.04 -0.03 -0.03 0.06 0.04 -0.02 0.01 0.15 0.11 0.08 0.14 0.11 -0.02 0.10 0.03 -0.01 0.02 0.02 -0.00 0.03 0.01 ]
T [ 0.01 0.01 0.02 -0.00 -0.01 -0.03 -0.07 -0.02 -0.05 0.05 -0.03 -0.04 -0.06 0.02 -0.03 0.00 -0.02 -0.05 -0.02 0.03 -0.03 0.02 0.01 -0.01 -0.00 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_1

Num. of seqlets: 3369

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_3

Num. of seqlets: 319

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_4

Num. of seqlets: 159

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_7

Num. of seqlets: 51

CWM

PFM

     

HCWM

447 profiles found for the same TF (CTCF) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000001.1 CTCF ENCSR000AHD MCF-7 Homo sapiens MA0139.2
BP000002.1 CTCF ENCSR000AKB GM12878 Homo sapiens MA0139.2
BP000003.1 CTCF ENCSR000AKO K562 Homo sapiens MA0139.2
BP000004.1 CTCF ENCSR000ALA endothelial cell of umbilical vein Homo sapiens MA0139.2
BP000005.1 CTCF ENCSR000ALJ keratinocyte Homo sapiens MA0139.2
BP000006.1 CTCF ENCSR000ALV mammary epithelial cell Homo sapiens MA0139.2
BP000007.1 CTCF ENCSR000AMA HepG2 Homo sapiens MA0139.2
BP000008.1 CTCF ENCSR000AMF H1 Homo sapiens MA0139.2
BP000009.1 CTCF ENCSR000ANE skeletal muscle myoblast Homo sapiens MA0139.2
BP000010.1 CTCF ENCSR000ANO fibroblast of lung Homo sapiens MA0139.2
Showing 10 profiles of page 1 from 45 pages