Detailed information of deep learning profile BP000252.1

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This page shows detailed deep learning-derived predictions and motifs for CTCF in MM.1S using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: CTCF
Model ID: BP000252.1
Cell line/tissue: MM.1S
Class: C2H2 zinc finger factors
Family: More than 3 adjacent zinc fingers
JASPAR ID: MA0139.2
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: P49711  
Source: ENCSR402IDP
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ -0.00 -0.00 -0.00 0.00 -0.00 -0.00 0.02 -0.00 -0.00 0.06 -0.00 0.01 -0.00 -0.00 -0.00 -0.00 0.01 -0.00 -0.00 0.01 -0.00 ]
C [ 0.00 0.01 0.00 -0.00 0.07 0.14 0.00 0.04 0.01 -0.00 -0.00 -0.00 -0.00 -0.00 0.00 0.07 0.00 0.03 0.01 0.00 0.00 ]
G [ 0.00 -0.00 0.01 0.02 -0.00 -0.00 0.00 0.01 -0.00 0.00 0.14 0.06 0.04 0.12 0.08 0.00 0.04 0.01 -0.00 0.00 0.00 ]
T [ 0.00 0.01 -0.00 -0.00 -0.00 -0.00 -0.00 -0.00 0.02 -0.00 -0.00 -0.00 0.01 -0.00 -0.00 -0.00 -0.00 -0.00 0.01 -0.00 0.01 ]

Frequency matrix

       
A [ 4492 4075 3807 5251 6612 5039 3835 4685 3841 4254 4889 4936 4931 5092 4496 3142 4364 5580 2035 752 11841 1711 3291 15235 396 6318 1842 519 1037 3618 7023 2388 3308 6360 3779 5453 4388 5210 4625 4538 5048 5819 4403 5047 5369 5208 5105 5182 4996 5063 ]
C [ 4732 3701 5081 5984 4294 4148 3581 4792 7829 6779 5909 5596 5337 4774 5441 6554 4536 2586 14784 18479 1484 10160 7402 661 119 210 831 316 1740 12732 2081 9615 6110 4836 4141 4119 4077 5245 5982 6728 5949 4565 5262 4677 4678 4807 4795 4925 5121 4970 ]
G [ 4895 6462 6567 3820 4728 4659 4448 4536 3359 3776 4367 4722 4472 4228 4780 3245 6249 8111 1662 417 2890 7203 1988 2348 19175 13025 11124 18526 15241 1443 9216 5105 2530 5804 5167 4631 7573 5277 5229 3699 3980 5169 5398 5395 5165 4783 4956 5265 5326 5175 ]
T [ 5814 5695 4478 4878 4299 6087 8069 5920 4904 5124 4768 4679 5193 5839 5216 6992 4784 3656 1452 285 3718 859 7252 1689 243 380 6136 572 1915 2140 1613 2825 7985 2933 6846 5730 3895 4201 4097 4968 4956 4380 4870 4814 4721 5135 5077 4561 4490 4725 ]

Hypothetical CWM

   
A [ 0.00 -0.00 -0.02 -0.01 0.02 -0.01 -0.03 0.03 -0.02 -0.01 0.07 -0.04 0.03 -0.05 -0.04 -0.04 -0.02 0.02 -0.02 -0.01 0.02 -0.01 0.01 -0.00 0.00 ]
C [ 0.01 0.01 0.04 0.03 -0.01 0.09 0.14 -0.02 0.09 0.04 -0.00 -0.03 -0.06 -0.01 -0.03 -0.02 0.10 -0.02 0.05 0.03 0.02 0.01 0.01 0.00 0.01 ]
G [ 0.01 0.01 -0.00 0.03 0.04 -0.02 -0.03 0.05 0.04 -0.01 0.02 0.14 0.10 0.08 0.13 0.09 -0.02 0.09 0.03 -0.01 0.02 0.02 0.00 0.03 0.01 ]
T [ 0.01 0.01 0.02 -0.00 -0.02 -0.03 -0.06 -0.02 -0.05 0.05 -0.03 -0.03 -0.05 0.02 -0.03 0.00 -0.02 -0.04 -0.01 0.02 -0.03 0.02 0.01 -0.00 -0.00 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_2

Num. of seqlets: 334

CWM

PFM

     

HCWM

447 profiles found for the same TF (CTCF) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000001.1 CTCF ENCSR000AHD MCF-7 Homo sapiens MA0139.2
BP000002.1 CTCF ENCSR000AKB GM12878 Homo sapiens MA0139.2
BP000003.1 CTCF ENCSR000AKO K562 Homo sapiens MA0139.2
BP000004.1 CTCF ENCSR000ALA endothelial cell of umbilical vein Homo sapiens MA0139.2
BP000005.1 CTCF ENCSR000ALJ keratinocyte Homo sapiens MA0139.2
BP000006.1 CTCF ENCSR000ALV mammary epithelial cell Homo sapiens MA0139.2
BP000007.1 CTCF ENCSR000AMA HepG2 Homo sapiens MA0139.2
BP000008.1 CTCF ENCSR000AMF H1 Homo sapiens MA0139.2
BP000009.1 CTCF ENCSR000ANE skeletal muscle myoblast Homo sapiens MA0139.2
BP000010.1 CTCF ENCSR000ANO fibroblast of lung Homo sapiens MA0139.2
Showing 10 profiles of page 1 from 45 pages