Detailed information of deep learning profile BP000250.1

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This page shows detailed deep learning-derived predictions and motifs for CTCF in uterus using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: CTCF
Model ID: BP000250.1
Cell line/tissue: uterus
Class: C2H2 zinc finger factors
Family: More than 3 adjacent zinc fingers
JASPAR ID: MA0139.2
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: P49711  
Source: ENCSR392SFJ
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ -0.00 -0.00 -0.00 0.00 -0.00 -0.00 0.02 -0.00 -0.00 0.06 -0.00 0.02 -0.00 -0.00 -0.00 -0.00 0.01 -0.00 -0.00 0.01 -0.00 ]
C [ 0.00 0.01 0.00 -0.00 0.07 0.14 -0.00 0.05 0.01 -0.00 -0.00 0.00 -0.00 -0.00 -0.00 0.06 -0.00 0.02 0.01 0.00 -0.00 ]
G [ -0.00 -0.00 0.01 0.01 -0.00 -0.00 0.00 0.01 -0.00 0.00 0.13 0.05 0.03 0.12 0.08 -0.00 0.04 0.01 -0.00 0.00 0.00 ]
T [ 0.00 0.01 -0.00 -0.00 -0.00 -0.00 -0.00 -0.00 0.01 -0.00 -0.00 -0.00 0.01 -0.00 -0.00 -0.00 -0.00 -0.00 0.01 -0.00 0.01 ]

Frequency matrix

       
A [ 4069 3564 3377 5075 6748 4558 3372 4212 3409 3897 4454 4856 4935 4995 4306 2647 4144 5239 1812 603 12627 1089 3012 15402 258 7376 1185 339 553 2969 7578 1958 2639 6691 3380 5534 4019 4576 4432 3796 4781 6130 3858 4700 5040 5507 4946 4654 4795 4832 ]
C [ 4426 3186 4683 5900 3770 3541 2971 4510 7738 6481 5879 5175 4714 4126 4649 5956 3715 2055 14278 17614 880 10475 7160 548 85 186 864 206 756 13137 1058 9042 6126 4523 3705 3494 3236 5144 6182 7289 5963 3654 5142 4285 4228 3978 4196 4432 4657 4726 ]
G [ 4622 6434 6390 3306 4300 4525 3993 4217 2850 3235 4104 4187 4163 3713 4575 2715 6310 7784 1261 182 2684 6460 1525 1594 18099 10807 10050 17768 15722 743 8884 5764 2129 5383 4972 4029 7880 5011 4295 2732 2879 5063 4917 4995 4620 4120 4123 5241 5011 4851 ]
T [ 5457 5390 4124 4293 3756 5950 8238 5635 4577 4961 4137 4356 4762 5740 5044 7256 4405 3496 1223 175 2383 550 6877 1030 132 205 6475 261 1543 1725 1054 1810 7680 1977 6517 5517 3439 3843 3665 4757 4951 3727 4657 4594 4686 4969 5309 4247 4111 4165 ]

Hypothetical CWM

   
A [ 0.01 0.00 -0.01 -0.01 0.02 -0.01 -0.02 0.03 -0.02 -0.01 0.07 -0.03 0.04 -0.04 -0.03 -0.03 -0.01 0.02 -0.01 -0.01 0.03 -0.01 0.01 0.00 0.00 ]
C [ 0.00 0.01 0.03 0.02 -0.01 0.09 0.14 -0.03 0.09 0.04 -0.00 -0.02 -0.05 -0.00 -0.03 -0.02 0.09 -0.02 0.04 0.03 0.02 0.00 0.00 -0.00 0.01 ]
G [ 0.00 0.01 -0.00 0.03 0.04 -0.02 -0.02 0.06 0.04 -0.01 0.01 0.13 0.09 0.07 0.13 0.09 -0.02 0.09 0.04 -0.01 0.02 0.01 -0.00 0.03 0.01 ]
T [ 0.01 0.01 0.02 -0.00 -0.01 -0.02 -0.06 -0.02 -0.04 0.05 -0.03 -0.03 -0.06 0.02 -0.03 0.01 -0.02 -0.04 -0.01 0.02 -0.03 0.02 0.01 -0.00 -0.00 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_1

Num. of seqlets: 1625

CWM

PFM

     

HCWM

447 profiles found for the same TF (CTCF) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000001.1 CTCF ENCSR000AHD MCF-7 Homo sapiens MA0139.2
BP000002.1 CTCF ENCSR000AKB GM12878 Homo sapiens MA0139.2
BP000003.1 CTCF ENCSR000AKO K562 Homo sapiens MA0139.2
BP000004.1 CTCF ENCSR000ALA endothelial cell of umbilical vein Homo sapiens MA0139.2
BP000005.1 CTCF ENCSR000ALJ keratinocyte Homo sapiens MA0139.2
BP000006.1 CTCF ENCSR000ALV mammary epithelial cell Homo sapiens MA0139.2
BP000007.1 CTCF ENCSR000AMA HepG2 Homo sapiens MA0139.2
BP000008.1 CTCF ENCSR000AMF H1 Homo sapiens MA0139.2
BP000009.1 CTCF ENCSR000ANE skeletal muscle myoblast Homo sapiens MA0139.2
BP000010.1 CTCF ENCSR000ANO fibroblast of lung Homo sapiens MA0139.2
Showing 10 profiles of page 1 from 45 pages