Detailed information of deep learning profile BP000250.1

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This page shows detailed deep learning-derived predictions and motifs for CTCF in uterus using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: CTCF
Model ID: BP000250.1
Cell line/tissue: uterus
Class: C2H2 zinc finger factors
Family: More than 3 adjacent zinc fingers
JASPAR ID: MA0139.2
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: P49711  
Source: ENCSR392SFJ
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ 0.01 -0.00 0.01 -0.00 -0.00 -0.00 -0.00 -0.00 0.01 -0.00 -0.00 -0.00 0.01 -0.00 -0.00 -0.00 -0.00 -0.00 -0.00 0.01 0.00 ]
C [ 0.00 0.00 -0.00 0.01 0.04 -0.00 0.08 0.12 0.03 0.05 0.13 0.00 -0.00 0.01 0.00 -0.00 -0.00 0.01 0.01 -0.00 -0.00 ]
G [ -0.00 0.00 0.01 0.02 -0.00 0.06 -0.00 -0.00 -0.00 0.00 -0.00 -0.00 0.01 0.05 -0.00 0.14 0.07 -0.00 0.00 0.01 0.00 ]
T [ -0.00 0.01 -0.00 -0.00 0.01 -0.00 -0.00 -0.00 -0.00 0.02 -0.00 0.06 -0.00 -0.00 0.02 -0.00 -0.00 0.00 -0.00 -0.00 -0.00 ]

Frequency matrix

       
A [ 4165 4111 4247 5309 4969 4686 4594 4657 3727 4951 4757 3665 3843 3439 5517 6517 1977 7680 1810 1054 1725 1543 261 6475 205 132 1030 6877 550 2383 175 1223 3496 4405 7256 5044 5740 4762 4356 4137 4961 4577 5635 8238 5950 3756 4293 4124 5390 5457 ]
C [ 4851 5011 5241 4123 4120 4620 4995 4917 5063 2879 2732 4295 5011 7880 4029 4972 5383 2129 5764 8884 743 15722 17768 10050 10807 18099 1594 1525 6460 2684 182 1261 7784 6310 2715 4575 3713 4163 4187 4104 3235 2850 4217 3993 4525 4300 3306 6390 6434 4622 ]
G [ 4726 4657 4432 4196 3978 4228 4285 5142 3654 5963 7289 6182 5144 3236 3494 3705 4523 6126 9042 1058 13137 756 206 864 186 85 548 7160 10475 880 17614 14278 2055 3715 5956 4649 4126 4714 5175 5879 6481 7738 4510 2971 3541 3770 5900 4683 3186 4426 ]
T [ 4832 4795 4654 4946 5507 5040 4700 3858 6130 4781 3796 4432 4576 4019 5534 3380 6691 2639 1958 7578 2969 553 339 1185 7376 258 15402 3012 1089 12627 603 1812 5239 4144 2647 4306 4995 4935 4856 4454 3897 3409 4212 3372 4558 6748 5075 3377 3564 4069 ]

Hypothetical CWM

   
A [ -0.00 -0.00 0.01 0.02 -0.03 0.02 -0.01 -0.04 -0.02 0.01 -0.03 0.02 -0.06 -0.03 -0.03 0.05 -0.04 -0.02 -0.06 -0.02 -0.01 -0.00 0.02 0.01 0.01 ]
C [ 0.01 0.03 -0.00 0.01 0.02 -0.01 0.04 0.09 -0.02 0.09 0.13 0.07 0.09 0.13 0.01 -0.01 0.04 0.06 -0.02 -0.02 0.04 0.03 -0.00 0.01 0.00 ]
G [ 0.01 -0.00 0.00 0.00 0.02 0.03 0.04 -0.02 0.09 -0.02 -0.03 -0.00 -0.05 -0.02 -0.00 0.04 0.09 -0.03 0.14 0.09 -0.01 0.02 0.03 0.01 0.00 ]
T [ 0.00 0.00 0.01 -0.01 0.03 -0.01 -0.01 0.02 -0.01 -0.03 -0.03 -0.04 0.04 -0.03 0.07 -0.01 -0.02 0.03 -0.02 -0.01 0.02 -0.01 -0.01 0.00 0.01 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_1

Num. of seqlets: 1625

CWM

PFM

     

HCWM

447 profiles found for the same TF (CTCF) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000001.1 CTCF ENCSR000AHD MCF-7 Homo sapiens MA0139.2
BP000002.1 CTCF ENCSR000AKB GM12878 Homo sapiens MA0139.2
BP000003.1 CTCF ENCSR000AKO K562 Homo sapiens MA0139.2
BP000004.1 CTCF ENCSR000ALA endothelial cell of umbilical vein Homo sapiens MA0139.2
BP000005.1 CTCF ENCSR000ALJ keratinocyte Homo sapiens MA0139.2
BP000006.1 CTCF ENCSR000ALV mammary epithelial cell Homo sapiens MA0139.2
BP000007.1 CTCF ENCSR000AMA HepG2 Homo sapiens MA0139.2
BP000008.1 CTCF ENCSR000AMF H1 Homo sapiens MA0139.2
BP000009.1 CTCF ENCSR000ANE skeletal muscle myoblast Homo sapiens MA0139.2
BP000010.1 CTCF ENCSR000ANO fibroblast of lung Homo sapiens MA0139.2
Showing 10 profiles of page 1 from 45 pages