Detailed information of deep learning profile BP000249.1

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This page shows detailed deep learning-derived predictions and motifs for CTCF in Peyer's patch using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: CTCF
Model ID: BP000249.1
Cell line/tissue: Peyer's patch
Class: C2H2 zinc finger factors
Family: More than 3 adjacent zinc fingers
JASPAR ID: MA0139.2
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: P49711  
Source: ENCSR391ZKN
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ 0.01 -0.00 0.01 -0.00 -0.00 -0.00 -0.00 -0.00 0.00 -0.00 -0.00 -0.00 0.01 -0.00 -0.00 -0.00 -0.00 -0.00 -0.00 0.01 0.00 ]
C [ 0.00 0.00 -0.00 0.01 0.04 -0.00 0.07 0.11 0.03 0.05 0.12 0.00 -0.00 0.01 0.01 -0.00 -0.00 0.01 0.01 -0.00 0.00 ]
G [ -0.00 0.00 0.01 0.02 -0.00 0.06 0.00 -0.00 0.00 -0.00 0.00 -0.00 0.01 0.05 -0.00 0.13 0.07 -0.00 0.00 0.01 0.00 ]
T [ -0.00 0.01 -0.00 -0.00 0.01 -0.00 -0.00 -0.00 -0.00 0.01 -0.00 0.06 -0.00 -0.00 0.02 -0.00 -0.00 0.00 -0.00 -0.00 -0.00 ]

Frequency matrix

       
A [ 4179 4058 4144 5169 4854 4584 4467 4531 3683 4673 4549 3690 3781 3476 5229 6172 2184 7157 1969 1056 1701 1611 469 6342 253 154 905 6839 495 2030 141 1016 3149 4127 7692 5053 5959 4685 4127 4060 4791 4431 5697 8893 6050 3351 4279 3823 5401 5277 ]
C [ 4838 4877 5221 4185 4021 4589 5035 4804 5074 2799 2653 4213 4832 7654 4092 5027 5188 2302 5626 8827 967 14943 17147 10098 11360 17896 1389 1309 5790 2773 155 1038 8040 6684 2504 4727 3582 3935 4143 3918 3039 2572 4073 3788 4343 4376 2997 6834 6697 4705 ]
G [ 4782 4697 4437 4232 4091 4286 4323 5257 3558 6085 7359 6181 5163 3227 3568 3787 4439 6209 8691 1289 13147 1028 371 861 197 136 593 7439 11208 743 17796 14836 1856 3971 5886 4417 3996 4816 5384 5943 6945 8471 4353 2660 3412 3661 6124 4700 2977 4525 ]
T [ 4641 4808 4638 4854 5474 4981 4615 3848 6125 4883 3879 4356 4664 4083 5551 3454 6629 2772 2154 7268 2625 858 453 1139 6630 254 15553 2853 947 12894 348 1550 5395 3658 2358 4243 4903 5004 4786 4519 3665 2966 4317 3099 4635 7052 5040 3083 3365 3933 ]

Hypothetical CWM

   
A [ 0.00 0.02 -0.02 0.02 -0.01 -0.04 -0.02 -0.00 -0.03 0.01 -0.05 -0.04 -0.03 0.04 -0.05 -0.03 -0.06 -0.03 -0.01 -0.01 0.02 0.01 0.01 0.00 0.00 ]
C [ -0.00 0.01 0.01 -0.01 0.02 0.08 -0.02 0.08 0.11 0.07 0.09 0.12 0.02 -0.02 0.03 0.06 -0.02 -0.02 0.04 0.03 -0.01 0.01 0.00 0.01 0.00 ]
G [ 0.00 0.00 0.01 0.02 0.03 -0.02 0.08 -0.02 -0.03 0.00 -0.05 -0.02 -0.01 0.03 0.08 -0.03 0.13 0.09 -0.02 0.03 0.04 0.01 0.00 0.01 0.01 ]
T [ 0.01 -0.01 0.02 -0.01 -0.01 0.01 -0.01 -0.03 -0.04 -0.05 0.03 -0.04 0.07 -0.01 -0.02 0.03 -0.02 -0.01 0.02 -0.01 -0.02 -0.00 0.00 0.01 0.00 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_1

Num. of seqlets: 556

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_2

Num. of seqlets: 492

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_3

Num. of seqlets: 443

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_5

Num. of seqlets: 359

CWM

PFM

     

HCWM

447 profiles found for the same TF (CTCF) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000001.1 CTCF ENCSR000AHD MCF-7 Homo sapiens MA0139.2
BP000002.1 CTCF ENCSR000AKB GM12878 Homo sapiens MA0139.2
BP000003.1 CTCF ENCSR000AKO K562 Homo sapiens MA0139.2
BP000004.1 CTCF ENCSR000ALA endothelial cell of umbilical vein Homo sapiens MA0139.2
BP000005.1 CTCF ENCSR000ALJ keratinocyte Homo sapiens MA0139.2
BP000006.1 CTCF ENCSR000ALV mammary epithelial cell Homo sapiens MA0139.2
BP000007.1 CTCF ENCSR000AMA HepG2 Homo sapiens MA0139.2
BP000008.1 CTCF ENCSR000AMF H1 Homo sapiens MA0139.2
BP000009.1 CTCF ENCSR000ANE skeletal muscle myoblast Homo sapiens MA0139.2
BP000010.1 CTCF ENCSR000ANO fibroblast of lung Homo sapiens MA0139.2
Showing 10 profiles of page 1 from 45 pages