Detailed information of deep learning profile BP000249.1

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This page shows detailed deep learning-derived predictions and motifs for CTCF in Peyer's patch using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: CTCF
Model ID: BP000249.1
Cell line/tissue: Peyer's patch
Class: C2H2 zinc finger factors
Family: More than 3 adjacent zinc fingers
JASPAR ID: MA0139.2
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: P49711  
Source: ENCSR391ZKN
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ -0.00 -0.00 -0.00 0.00 -0.00 -0.00 0.02 -0.00 -0.00 0.06 -0.00 0.01 -0.00 -0.00 -0.00 -0.00 0.01 -0.00 -0.00 0.01 -0.00 ]
C [ 0.00 0.01 0.00 -0.00 0.07 0.13 -0.00 0.05 0.01 -0.00 0.00 -0.00 0.00 -0.00 0.00 0.06 -0.00 0.02 0.01 0.00 -0.00 ]
G [ 0.00 -0.00 0.01 0.01 -0.00 -0.00 0.01 0.01 -0.00 0.00 0.12 0.05 0.03 0.11 0.07 -0.00 0.04 0.01 -0.00 0.00 0.00 ]
T [ 0.00 0.01 -0.00 -0.00 -0.00 -0.00 -0.00 -0.00 0.01 -0.00 -0.00 -0.00 0.00 -0.00 -0.00 -0.00 -0.00 -0.00 0.01 -0.00 0.01 ]

Frequency matrix

       
A [ 3933 3365 3083 5040 7052 4635 3099 4317 2966 3665 4519 4786 5004 4903 4243 2358 3658 5395 1550 348 12894 947 2853 15553 254 6630 1139 453 858 2625 7268 2154 2772 6629 3454 5551 4083 4664 4356 3879 4883 6125 3848 4615 4981 5474 4854 4638 4808 4641 ]
C [ 4525 2977 4700 6124 3661 3412 2660 4353 8471 6945 5943 5384 4816 3996 4417 5886 3971 1856 14836 17796 743 11208 7439 593 136 197 861 371 1028 13147 1289 8691 6209 4439 3787 3568 3227 5163 6181 7359 6085 3558 5257 4323 4286 4091 4232 4437 4697 4782 ]
G [ 4705 6697 6834 2997 4376 4343 3788 4073 2572 3039 3918 4143 3935 3582 4727 2504 6684 8040 1038 155 2773 5790 1309 1389 17896 11360 10098 17147 14943 967 8827 5626 2302 5188 5027 4092 7654 4832 4213 2653 2799 5074 4804 5035 4589 4021 4185 5221 4877 4838 ]
T [ 5277 5401 3823 4279 3351 6050 8893 5697 4431 4791 4060 4127 4685 5959 5053 7692 4127 3149 1016 141 2030 495 6839 905 154 253 6342 469 1611 1701 1056 1969 7157 2184 6172 5229 3476 3781 3690 4549 4673 3683 4531 4467 4584 4854 5169 4144 4058 4179 ]

Hypothetical CWM

   
A [ 0.00 0.01 0.00 -0.00 -0.02 -0.01 0.02 -0.01 -0.02 0.03 -0.02 -0.01 0.07 -0.04 0.03 -0.05 -0.04 -0.03 -0.01 0.01 -0.01 -0.01 0.02 -0.01 0.01 ]
C [ 0.01 0.01 0.00 0.01 0.04 0.03 -0.02 0.09 0.13 -0.03 0.08 0.03 -0.01 -0.02 -0.05 0.00 -0.03 -0.02 0.08 -0.02 0.03 0.02 0.01 0.00 0.00 ]
G [ 0.00 0.01 0.00 0.01 -0.01 0.03 0.04 -0.02 -0.02 0.06 0.03 -0.02 0.02 0.12 0.09 0.07 0.11 0.08 -0.02 0.08 0.02 -0.01 0.01 0.01 -0.00 ]
T [ 0.00 0.00 0.01 0.01 0.02 -0.01 -0.01 -0.03 -0.06 -0.03 -0.05 0.04 -0.03 -0.04 -0.05 0.01 -0.03 -0.00 -0.02 -0.04 -0.01 0.02 -0.02 0.02 0.00 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_1

Num. of seqlets: 556

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_2

Num. of seqlets: 492

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_3

Num. of seqlets: 443

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_5

Num. of seqlets: 359

CWM

PFM

     

HCWM

447 profiles found for the same TF (CTCF) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000031.1 CTCF ENCSR000DKP GM10248 Homo sapiens MA0139.2
BP000032.1 CTCF ENCSR000DKR GM10266 Homo sapiens MA0139.2
BP000033.1 CTCF ENCSR000DKV GM12878 Homo sapiens MA0139.2
BP000034.1 CTCF ENCSR000DKZ GM13976 Homo sapiens MA0139.2
BP000035.1 CTCF ENCSR000DLB GM13977 Homo sapiens MA0139.2
BP000036.1 CTCF ENCSR000DLG GM20000 Homo sapiens MA0139.2
BP000037.1 CTCF ENCSR000DLK H1 Homo sapiens MA0139.2
BP000038.1 CTCF ENCSR000DLO HeLa-S3 Homo sapiens MA0139.2
BP000039.1 CTCF ENCSR000DLS HepG2 Homo sapiens MA0139.2
BP000040.1 CTCF ENCSR000DLW endothelial cell of umbilical vein Homo sapiens MA0139.2
Showing 10 profiles of page 4 from 45 pages