Detailed information of deep learning profile BP000248.1

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This page shows detailed deep learning-derived predictions and motifs for CTCF in HCT116 using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: CTCF
Model ID: BP000248.1
Cell line/tissue: HCT116
Class: C2H2 zinc finger factors
Family: More than 3 adjacent zinc fingers
JASPAR ID: MA0139.2
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: P49711  
Source: ENCSR385CDF
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ -0.00 -0.00 -0.00 0.01 -0.00 -0.00 0.03 -0.00 -0.00 0.08 -0.00 0.00 -0.00 -0.00 -0.00 -0.00 0.00 -0.00 -0.00 0.01 ]
C [ 0.00 0.01 0.01 -0.00 0.10 0.15 -0.00 0.06 0.01 -0.00 -0.00 -0.00 -0.00 -0.00 0.00 0.05 0.00 0.01 0.00 0.00 ]
G [ -0.00 -0.00 0.01 0.01 -0.00 -0.00 0.00 0.01 -0.00 0.00 0.16 0.08 0.05 0.12 0.06 -0.00 0.03 0.00 -0.00 0.00 ]
T [ 0.00 0.01 -0.00 -0.00 -0.00 -0.00 -0.00 -0.00 0.02 -0.00 -0.00 -0.00 0.00 -0.00 -0.00 -0.00 -0.00 -0.00 0.01 -0.00 ]

Frequency matrix

       
A [ 3701 3326 2943 4368 6405 4309 2807 3959 2695 3609 4126 4463 4104 4049 3613 2143 3368 5116 1340 479 10798 1144 2364 13071 131 3819 1800 822 1960 3474 5354 2977 3296 5076 3545 4518 3799 4219 4031 4113 4520 4673 3893 4147 4209 4387 4291 4310 4309 4263 ]
C [ 3410 2308 3652 4875 2910 2772 2122 3434 7182 5517 4830 4009 3668 3433 4247 5284 3634 1607 12829 14814 774 9067 6054 252 38 122 814 715 1645 7885 2278 5868 4147 3402 3121 2951 3107 3827 4230 4580 3888 3197 3779 3455 3501 3569 3577 3494 3560 3708 ]
G [ 3548 5209 5524 2434 3200 3393 2877 3129 1956 2207 3028 3226 3090 2779 3339 1889 4909 5975 678 136 1263 4904 755 1342 15274 11069 8953 12597 9917 1766 5751 3835 2548 3998 3836 3428 4975 3790 3609 2745 3054 3785 3702 3758 3709 3270 3440 3727 3744 3634 ]
T [ 4906 4722 3446 3888 3050 5091 7759 5043 3732 4232 3581 3867 4703 5304 4366 6249 3654 2867 718 136 2730 450 6392 900 122 555 3998 1431 2043 2440 2182 2885 5574 3089 5063 4668 3684 3729 3695 4127 4103 3910 4191 4205 4146 4339 4257 4034 3952 3960 ]

Hypothetical CWM

   
A [ 0.01 0.00 0.00 -0.00 -0.03 -0.02 0.02 -0.01 -0.02 0.04 -0.01 -0.01 0.09 -0.06 0.01 -0.05 -0.06 -0.03 -0.00 0.01 -0.01 -0.00 0.01 -0.01 ]
C [ 0.02 0.01 0.00 0.02 0.05 0.03 -0.02 0.12 0.16 -0.03 0.10 0.04 -0.02 -0.03 -0.06 -0.01 -0.02 -0.02 0.07 -0.00 0.03 0.01 0.01 0.00 ]
G [ 0.00 0.01 0.00 0.01 -0.01 0.04 0.04 -0.04 -0.03 0.05 0.05 -0.04 0.01 0.16 0.11 0.08 0.13 0.08 -0.02 0.06 0.02 -0.01 0.01 0.00 ]
T [ 0.00 0.01 0.01 0.01 0.03 -0.00 -0.01 -0.05 -0.07 -0.02 -0.06 0.05 -0.04 -0.05 -0.05 0.00 -0.03 -0.00 -0.02 -0.03 -0.01 0.01 -0.01 0.01 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_2

Num. of seqlets: 1081

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_5

Num. of seqlets: 491

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_6

Num. of seqlets: 275

CWM

PFM

     

HCWM

447 profiles found for the same TF (CTCF) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000001.1 CTCF ENCSR000AHD MCF-7 Homo sapiens MA0139.2
BP000002.1 CTCF ENCSR000AKB GM12878 Homo sapiens MA0139.2
BP000003.1 CTCF ENCSR000AKO K562 Homo sapiens MA0139.2
BP000004.1 CTCF ENCSR000ALA endothelial cell of umbilical vein Homo sapiens MA0139.2
BP000005.1 CTCF ENCSR000ALJ keratinocyte Homo sapiens MA0139.2
BP000006.1 CTCF ENCSR000ALV mammary epithelial cell Homo sapiens MA0139.2
BP000007.1 CTCF ENCSR000AMA HepG2 Homo sapiens MA0139.2
BP000008.1 CTCF ENCSR000AMF H1 Homo sapiens MA0139.2
BP000009.1 CTCF ENCSR000ANE skeletal muscle myoblast Homo sapiens MA0139.2
BP000010.1 CTCF ENCSR000ANO fibroblast of lung Homo sapiens MA0139.2
Showing 10 profiles of page 1 from 45 pages