Detailed information of deep learning profile BP000248.1

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This page shows detailed deep learning-derived predictions and motifs for CTCF in HCT116 using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: CTCF
Model ID: BP000248.1
Cell line/tissue: HCT116
Class: C2H2 zinc finger factors
Family: More than 3 adjacent zinc fingers
JASPAR ID: MA0139.2
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: P49711  
Source: ENCSR385CDF
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ -0.00 0.01 -0.00 -0.00 -0.00 -0.00 -0.00 0.00 -0.00 -0.00 -0.00 0.02 -0.00 -0.00 -0.00 -0.00 -0.00 -0.00 0.01 0.00 ]
C [ 0.00 -0.00 0.00 0.03 -0.00 0.06 0.12 0.05 0.08 0.16 0.00 -0.00 0.01 0.00 -0.00 -0.00 0.01 0.01 -0.00 -0.00 ]
G [ 0.00 0.00 0.01 0.00 0.05 0.00 -0.00 -0.00 -0.00 -0.00 -0.00 0.01 0.06 -0.00 0.15 0.10 -0.00 0.01 0.01 0.00 ]
T [ 0.01 -0.00 -0.00 0.00 -0.00 -0.00 -0.00 -0.00 0.00 -0.00 0.08 -0.00 -0.00 0.03 -0.00 -0.00 0.01 -0.00 -0.00 -0.00 ]

Frequency matrix

       
A [ 3960 3952 4034 4257 4339 4146 4205 4191 3910 4103 4127 3695 3729 3684 4668 5063 3089 5574 2885 2182 2440 2043 1431 3998 555 122 900 6392 450 2730 136 718 2867 3654 6249 4366 5304 4703 3867 3581 4232 3732 5043 7759 5091 3050 3888 3446 4722 4906 ]
C [ 3634 3744 3727 3440 3270 3709 3758 3702 3785 3054 2745 3609 3790 4975 3428 3836 3998 2548 3835 5751 1766 9917 12597 8953 11069 15274 1342 755 4904 1263 136 678 5975 4909 1889 3339 2779 3090 3226 3028 2207 1956 3129 2877 3393 3200 2434 5524 5209 3548 ]
G [ 3708 3560 3494 3577 3569 3501 3455 3779 3197 3888 4580 4230 3827 3107 2951 3121 3402 4147 5868 2278 7885 1645 715 814 122 38 252 6054 9067 774 14814 12829 1607 3634 5284 4247 3433 3668 4009 4830 5517 7182 3434 2122 2772 2910 4875 3652 2308 3410 ]
T [ 4263 4309 4310 4291 4387 4209 4147 3893 4673 4520 4113 4031 4219 3799 4518 3545 5076 3296 2977 5354 3474 1960 822 1800 3819 131 13071 2364 1144 10798 479 1340 5116 3368 2143 3613 4049 4104 4463 4126 3609 2695 3959 2807 4309 6405 4368 2943 3326 3701 ]

Hypothetical CWM

   
A [ 0.01 -0.01 0.01 -0.01 -0.03 -0.02 -0.00 -0.03 0.00 -0.05 -0.05 -0.04 0.05 -0.06 -0.02 -0.07 -0.05 -0.01 -0.00 0.03 0.01 0.01 0.01 0.00 ]
C [ 0.00 0.01 -0.01 0.02 0.06 -0.02 0.08 0.13 0.08 0.11 0.16 0.01 -0.04 0.05 0.05 -0.03 -0.04 0.04 0.04 -0.01 0.01 0.00 0.01 0.00 ]
G [ 0.00 0.01 0.01 0.03 -0.00 0.07 -0.02 -0.02 -0.01 -0.06 -0.03 -0.02 0.04 0.10 -0.03 0.16 0.12 -0.02 0.03 0.05 0.02 0.00 0.01 0.02 ]
T [ -0.01 0.01 -0.00 -0.01 0.01 -0.00 -0.03 -0.06 -0.05 0.01 -0.06 0.09 -0.01 -0.01 0.04 -0.02 -0.01 0.02 -0.02 -0.03 -0.00 0.00 0.00 0.01 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_2

Num. of seqlets: 1081

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_5

Num. of seqlets: 491

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_6

Num. of seqlets: 275

CWM

PFM

     

HCWM

447 profiles found for the same TF (CTCF) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000031.1 CTCF ENCSR000DKP GM10248 Homo sapiens MA0139.2
BP000032.1 CTCF ENCSR000DKR GM10266 Homo sapiens MA0139.2
BP000033.1 CTCF ENCSR000DKV GM12878 Homo sapiens MA0139.2
BP000034.1 CTCF ENCSR000DKZ GM13976 Homo sapiens MA0139.2
BP000035.1 CTCF ENCSR000DLB GM13977 Homo sapiens MA0139.2
BP000036.1 CTCF ENCSR000DLG GM20000 Homo sapiens MA0139.2
BP000037.1 CTCF ENCSR000DLK H1 Homo sapiens MA0139.2
BP000038.1 CTCF ENCSR000DLO HeLa-S3 Homo sapiens MA0139.2
BP000039.1 CTCF ENCSR000DLS HepG2 Homo sapiens MA0139.2
BP000040.1 CTCF ENCSR000DLW endothelial cell of umbilical vein Homo sapiens MA0139.2
Showing 10 profiles of page 4 from 45 pages