Detailed information of deep learning profile BP000247.1

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This page shows detailed deep learning-derived predictions and motifs for CTCF in A549 using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: CTCF
Model ID: BP000247.1
Cell line/tissue: A549
Class: C2H2 zinc finger factors
Family: More than 3 adjacent zinc fingers
JASPAR ID: MA0139.2
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: P49711  
Source: ENCSR384KPP
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ 0.01 -0.00 0.01 -0.00 -0.00 -0.00 -0.00 -0.00 0.01 -0.00 -0.00 -0.00 0.02 -0.00 -0.00 -0.00 -0.00 -0.00 -0.00 0.01 -0.00 ]
C [ 0.00 0.00 -0.00 0.01 0.05 -0.00 0.10 0.15 0.05 0.06 0.16 0.00 -0.00 0.01 0.00 -0.00 -0.00 0.02 0.01 -0.00 0.00 ]
G [ 0.00 0.01 0.01 0.03 -0.00 0.09 0.00 -0.00 -0.00 -0.00 -0.00 -0.00 0.01 0.05 -0.00 0.15 0.08 -0.00 0.00 0.01 0.00 ]
T [ -0.00 0.01 -0.00 -0.00 0.01 -0.00 -0.00 -0.00 -0.00 0.02 -0.00 0.07 -0.00 -0.00 0.02 -0.00 -0.00 0.00 -0.00 -0.00 -0.00 ]

Frequency matrix

       
A [ 4001 4026 3847 3759 3857 4342 4277 4011 3999 4130 3627 4338 4260 3347 3553 3032 5120 6058 1974 7193 1825 971 1436 1361 205 5708 180 147 1194 6322 638 2480 262 1237 3114 4134 6126 4344 4979 4294 4003 3881 4495 4157 4883 6711 5266 3557 3995 3863 ]
C [ 4269 4190 4314 4263 4439 3881 3808 4390 4499 4443 4203 2729 2694 4198 4275 6876 3591 4239 4809 1576 4584 7995 639 14052 15982 9239 9854 16031 1533 1466 5814 2361 415 1367 6838 5273 2765 4190 3397 3819 3854 3657 3093 2850 3832 3805 3867 3893 3202 5226 ]
G [ 4214 4057 4173 4198 3985 3883 3777 3676 3867 4383 3572 5175 6041 5281 4416 3042 3029 3323 3956 5445 8559 939 11890 712 72 581 159 90 470 6106 8747 1091 15245 12112 1994 3522 5142 4165 3872 4261 4519 4930 5459 6340 4000 2845 3296 3509 4884 4206 ]
T [ 4066 4277 4216 4330 4269 4444 4688 4473 4185 3594 5148 4308 3555 3724 4306 3600 4810 2930 5811 2336 1582 6645 2585 425 291 1022 6357 282 13353 2656 1351 10618 628 1834 4604 3621 2517 3851 4302 4176 4174 4082 3503 3203 3835 3189 4121 5591 4469 3255 ]

Hypothetical CWM

   
A [ -0.00 -0.01 0.01 0.03 -0.04 0.03 -0.01 -0.06 -0.02 0.01 -0.04 0.03 -0.07 -0.04 -0.03 0.05 -0.05 -0.02 -0.06 -0.03 -0.02 -0.01 0.02 0.00 0.01 0.00 ]
C [ 0.01 0.03 0.00 0.02 0.02 -0.01 0.04 0.12 -0.02 0.12 0.15 0.10 0.11 0.16 0.02 -0.01 0.05 0.06 -0.02 -0.02 0.05 0.04 -0.00 0.01 0.01 0.01 ]
G [ 0.02 0.01 0.01 0.01 0.03 0.04 0.07 -0.02 0.13 -0.02 -0.04 -0.00 -0.05 -0.02 0.00 0.05 0.11 -0.01 0.16 0.10 -0.01 0.03 0.04 0.01 0.01 0.01 ]
T [ -0.00 -0.00 0.01 -0.02 0.03 -0.02 -0.03 0.02 -0.02 -0.05 -0.03 -0.07 0.05 -0.05 0.08 -0.01 -0.02 0.03 -0.03 -0.01 0.02 -0.02 -0.02 0.00 0.00 0.00 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_2

Num. of seqlets: 323

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_6

Num. of seqlets: 24

CWM

PFM

     

HCWM

447 profiles found for the same TF (CTCF) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000001.1 CTCF ENCSR000AHD MCF-7 Homo sapiens MA0139.2
BP000002.1 CTCF ENCSR000AKB GM12878 Homo sapiens MA0139.2
BP000003.1 CTCF ENCSR000AKO K562 Homo sapiens MA0139.2
BP000004.1 CTCF ENCSR000ALA endothelial cell of umbilical vein Homo sapiens MA0139.2
BP000005.1 CTCF ENCSR000ALJ keratinocyte Homo sapiens MA0139.2
BP000006.1 CTCF ENCSR000ALV mammary epithelial cell Homo sapiens MA0139.2
BP000007.1 CTCF ENCSR000AMA HepG2 Homo sapiens MA0139.2
BP000008.1 CTCF ENCSR000AMF H1 Homo sapiens MA0139.2
BP000009.1 CTCF ENCSR000ANE skeletal muscle myoblast Homo sapiens MA0139.2
BP000010.1 CTCF ENCSR000ANO fibroblast of lung Homo sapiens MA0139.2
Showing 10 profiles of page 1 from 45 pages