Detailed information of deep learning profile BP000247.1

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This page shows detailed deep learning-derived predictions and motifs for CTCF in A549 using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: CTCF
Model ID: BP000247.1
Cell line/tissue: A549
Class: C2H2 zinc finger factors
Family: More than 3 adjacent zinc fingers
JASPAR ID: MA0139.2
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: P49711  
Source: ENCSR384KPP
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ -0.00 -0.00 -0.00 0.00 -0.00 -0.00 0.02 -0.00 -0.00 0.07 -0.00 0.02 -0.00 -0.00 -0.00 -0.00 0.01 -0.00 -0.00 0.01 -0.00 ]
C [ 0.00 0.01 0.00 -0.00 0.08 0.15 -0.00 0.05 0.01 -0.00 -0.00 -0.00 -0.00 -0.00 0.00 0.09 -0.00 0.03 0.01 0.01 0.00 ]
G [ 0.00 -0.00 0.01 0.02 -0.00 -0.00 0.00 0.01 -0.00 0.00 0.16 0.06 0.05 0.15 0.10 -0.00 0.05 0.01 -0.00 0.00 0.00 ]
T [ -0.00 0.01 -0.00 -0.00 -0.00 -0.00 -0.00 -0.00 0.02 -0.00 -0.00 -0.00 0.01 -0.00 -0.00 -0.00 -0.00 -0.00 0.01 -0.00 0.01 ]

Frequency matrix

       
A [ 3255 4469 5591 4121 3189 3835 3203 3503 4082 4174 4176 4302 3851 2517 3621 4604 1834 628 10618 1351 2656 13353 282 6357 1022 291 425 2585 6645 1582 2336 5811 2930 4810 3600 4306 3724 3555 4308 5148 3594 4185 4473 4688 4444 4269 4330 4216 4277 4066 ]
C [ 4206 4884 3509 3296 2845 4000 6340 5459 4930 4519 4261 3872 4165 5142 3522 1994 12112 15245 1091 8747 6106 470 90 159 581 72 712 11890 939 8559 5445 3956 3323 3029 3042 4416 5281 6041 5175 3572 4383 3867 3676 3777 3883 3985 4198 4173 4057 4214 ]
G [ 5226 3202 3893 3867 3805 3832 2850 3093 3657 3854 3819 3397 4190 2765 5273 6838 1367 415 2361 5814 1466 1533 16031 9854 9239 15982 14052 639 7995 4584 1576 4809 4239 3591 6876 4275 4198 2694 2729 4203 4443 4499 4390 3808 3881 4439 4263 4314 4190 4269 ]
T [ 3863 3995 3557 5266 6711 4883 4157 4495 3881 4003 4294 4979 4344 6126 4134 3114 1237 262 2480 638 6322 1194 147 180 5708 205 1361 1436 971 1825 7193 1974 6058 5120 3032 3553 3347 4260 4338 3627 4130 3999 4011 4277 4342 3857 3759 3847 4026 4001 ]

Hypothetical CWM

   
A [ 0.00 0.00 0.00 -0.02 -0.02 0.02 -0.01 -0.03 0.03 -0.02 -0.01 0.08 -0.05 0.05 -0.07 -0.03 -0.05 -0.02 0.02 -0.03 -0.02 0.03 -0.02 0.01 -0.00 -0.00 ]
C [ 0.01 0.01 0.01 0.04 0.03 -0.01 0.10 0.16 -0.01 0.11 0.05 0.00 -0.02 -0.05 -0.00 -0.04 -0.02 0.13 -0.02 0.07 0.04 0.03 0.01 0.01 0.01 0.02 ]
G [ 0.01 0.01 0.01 -0.00 0.04 0.05 -0.02 -0.02 0.06 0.05 -0.01 0.02 0.16 0.11 0.10 0.15 0.12 -0.02 0.12 0.04 -0.01 0.02 0.02 0.00 0.03 0.01 ]
T [ 0.00 0.01 0.00 0.02 -0.01 -0.02 -0.03 -0.06 -0.02 -0.05 0.05 -0.03 -0.04 -0.07 0.03 -0.04 0.01 -0.02 -0.06 -0.01 0.03 -0.04 0.03 0.01 -0.01 -0.00 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_2

Num. of seqlets: 323

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_6

Num. of seqlets: 24

CWM

PFM

     

HCWM

447 profiles found for the same TF (CTCF) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000021.1 CTCF ENCSR000BHV A549 Homo sapiens MA0139.2
BP000022.1 CTCF ENCSR000BHW A549 Homo sapiens MA0139.2
BP000023.1 CTCF ENCSR000BIE HepG2 Homo sapiens MA0139.2
BP000024.1 CTCF ENCSR000BLX SK-N-SH Homo sapiens MA0139.2
BP000025.1 CTCF ENCSR000BNH H1 Homo sapiens MA0139.2
BP000026.1 CTCF ENCSR000BNO T47D Homo sapiens MA0139.2
BP000027.1 CTCF ENCSR000BPJ K562 Homo sapiens MA0139.2
BP000028.1 CTCF ENCSR000BQE Ishikawa Homo sapiens MA0139.2
BP000029.1 CTCF ENCSR000BSE HCT116 Homo sapiens MA0139.2
BP000030.1 CTCF ENCSR000DKN H54 Homo sapiens MA0139.2
Showing 10 profiles of page 3 from 45 pages