Detailed information of deep learning profile BP000246.1

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This page shows detailed deep learning-derived predictions and motifs for CTCF in middle frontal area 46 using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: CTCF
Model ID: BP000246.1
Cell line/tissue: middle frontal area 46
Class: C2H2 zinc finger factors
Family: More than 3 adjacent zinc fingers
JASPAR ID: MA0139.2
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: P49711  
Source: ENCSR384DBJ
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ -0.00 -0.00 -0.01 0.00 -0.00 -0.00 0.04 -0.00 -0.01 0.09 -0.00 0.03 -0.00 -0.00 -0.00 -0.00 0.01 -0.00 -0.00 0.01 -0.01 ]
C [ 0.00 0.01 0.01 -0.00 0.10 0.20 -0.00 0.07 0.02 -0.00 -0.00 0.00 0.00 -0.00 0.00 0.12 -0.00 0.04 0.01 0.01 0.00 ]
G [ 0.00 -0.00 0.01 0.02 -0.00 -0.00 0.01 0.01 -0.00 0.00 0.21 0.07 0.06 0.19 0.14 -0.00 0.07 0.02 -0.00 0.01 0.00 ]
T [ 0.00 0.01 -0.00 -0.01 -0.00 -0.00 -0.01 -0.00 0.03 -0.00 -0.00 -0.00 0.01 -0.00 -0.00 -0.00 -0.00 -0.00 0.02 -0.00 0.01 ]

Frequency matrix

       
A [ 3779 5246 6667 4880 3806 4386 3827 4138 4809 4957 5019 5111 4424 2879 4344 5320 2057 686 12795 1397 3211 15678 318 7734 1186 334 485 2932 8020 1876 2747 7043 3453 5703 4316 4906 4473 4211 5057 6332 4073 5038 5212 5673 5166 5054 5062 5008 5031 4810 ]
C [ 4878 5815 3966 3776 3265 4670 7399 6565 5814 5286 4948 4410 4828 6148 4129 2243 14352 18250 1068 10517 6942 581 79 152 796 123 882 13955 1067 9753 6354 4665 3962 3582 3408 5121 6277 7389 6136 3944 5344 4440 4401 4283 4421 4557 4877 4850 4805 4916 ]
G [ 6203 3715 4557 4508 4235 4435 3203 3550 4276 4569 4448 3977 4858 3070 6236 8208 1476 242 2873 6773 1565 1811 18815 11291 10676 18652 16385 767 9216 5684 1937 5524 4909 4112 8130 5196 4759 2859 3123 5094 5115 5142 4988 4308 4349 5266 5076 5059 4924 5068 ]
T [ 4525 4609 4195 6221 8079 5894 4956 5132 4486 4573 4970 5887 5275 7288 4676 3614 1500 207 2649 698 7667 1315 173 208 6727 276 1633 1731 1082 2072 8347 2153 7061 5988 3531 4162 3876 4926 5069 4015 4853 4765 4784 5121 5449 4508 4370 4468 4625 4591 ]

Hypothetical CWM

   
A [ -0.00 0.01 0.01 -0.00 -0.02 -0.02 0.03 -0.01 -0.03 0.05 -0.04 -0.03 0.10 -0.06 0.06 -0.08 -0.05 -0.06 -0.02 0.03 -0.03 -0.03 0.04 -0.02 0.02 -0.00 0.01 0.01 ]
C [ 0.03 0.02 0.01 0.03 0.07 0.05 -0.01 0.13 0.20 -0.03 0.13 0.06 0.00 -0.01 -0.07 0.02 -0.04 -0.03 0.17 -0.02 0.08 0.06 0.04 0.03 0.02 0.01 0.03 0.03 ]
G [ 0.01 0.02 0.02 0.02 0.01 0.05 0.07 -0.03 -0.03 0.10 0.07 -0.02 0.03 0.21 0.14 0.11 0.20 0.16 -0.03 0.17 0.07 -0.00 0.04 0.03 -0.00 0.05 0.02 0.02 ]
T [ 0.00 0.00 0.02 0.01 0.02 -0.00 -0.01 -0.03 -0.08 -0.04 -0.06 0.07 -0.04 -0.06 -0.09 0.03 -0.05 0.01 -0.02 -0.07 -0.02 0.04 -0.05 0.03 0.01 -0.01 -0.01 -0.01 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_1

Num. of seqlets: 1335

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_2

Num. of seqlets: 611

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_4

Num. of seqlets: 363

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_5

Num. of seqlets: 152

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_8

Num. of seqlets: 62

CWM

PFM

     

HCWM

447 profiles found for the same TF (CTCF) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000001.1 CTCF ENCSR000AHD MCF-7 Homo sapiens MA0139.2
BP000002.1 CTCF ENCSR000AKB GM12878 Homo sapiens MA0139.2
BP000003.1 CTCF ENCSR000AKO K562 Homo sapiens MA0139.2
BP000004.1 CTCF ENCSR000ALA endothelial cell of umbilical vein Homo sapiens MA0139.2
BP000005.1 CTCF ENCSR000ALJ keratinocyte Homo sapiens MA0139.2
BP000006.1 CTCF ENCSR000ALV mammary epithelial cell Homo sapiens MA0139.2
BP000007.1 CTCF ENCSR000AMA HepG2 Homo sapiens MA0139.2
BP000008.1 CTCF ENCSR000AMF H1 Homo sapiens MA0139.2
BP000009.1 CTCF ENCSR000ANE skeletal muscle myoblast Homo sapiens MA0139.2
BP000010.1 CTCF ENCSR000ANO fibroblast of lung Homo sapiens MA0139.2
Showing 10 profiles of page 1 from 45 pages