Detailed information of deep learning profile BP000246.1

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This page shows detailed deep learning-derived predictions and motifs for CTCF in middle frontal area 46 using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: CTCF
Model ID: BP000246.1
Cell line/tissue: middle frontal area 46
Class: C2H2 zinc finger factors
Family: More than 3 adjacent zinc fingers
JASPAR ID: MA0139.2
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: P49711  
Source: ENCSR384DBJ
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ 0.01 -0.00 0.02 -0.00 -0.00 -0.00 -0.00 -0.00 0.01 -0.00 -0.00 -0.00 0.03 -0.00 -0.01 -0.00 -0.00 -0.01 -0.00 0.01 0.00 ]
C [ 0.00 0.01 -0.00 0.02 0.07 -0.00 0.14 0.19 0.06 0.07 0.21 0.00 -0.00 0.01 0.01 -0.00 -0.00 0.02 0.01 -0.00 0.00 ]
G [ 0.00 0.01 0.01 0.04 -0.00 0.12 0.00 -0.00 0.00 0.00 -0.00 -0.00 0.02 0.07 -0.00 0.20 0.10 -0.00 0.01 0.01 0.00 ]
T [ -0.01 0.01 -0.00 -0.00 0.01 -0.00 -0.00 -0.00 -0.00 0.03 -0.00 0.09 -0.01 -0.00 0.04 -0.00 -0.00 0.00 -0.01 -0.00 -0.00 ]

Frequency matrix

       
A [ 4591 4625 4468 4370 4508 5449 5121 4784 4765 4853 4015 5069 4926 3876 4162 3531 5988 7061 2153 8347 2072 1082 1731 1633 276 6727 208 173 1315 7667 698 2649 207 1500 3614 4676 7288 5275 5887 4970 4573 4486 5132 4956 5894 8079 6221 4195 4609 4525 ]
C [ 5068 4924 5059 5076 5266 4349 4308 4988 5142 5115 5094 3123 2859 4759 5196 8130 4112 4909 5524 1937 5684 9216 767 16385 18652 10676 11291 18815 1811 1565 6773 2873 242 1476 8208 6236 3070 4858 3977 4448 4569 4276 3550 3203 4435 4235 4508 4557 3715 6203 ]
G [ 4916 4805 4850 4877 4557 4421 4283 4401 4440 5344 3944 6136 7389 6277 5121 3408 3582 3962 4665 6354 9753 1067 13955 882 123 796 152 79 581 6942 10517 1068 18250 14352 2243 4129 6148 4828 4410 4948 5286 5814 6565 7399 4670 3265 3776 3966 5815 4878 ]
T [ 4810 5031 5008 5062 5054 5166 5673 5212 5038 4073 6332 5057 4211 4473 4906 4316 5703 3453 7043 2747 1876 8020 2932 485 334 1186 7734 318 15678 3211 1397 12795 686 2057 5320 4344 2879 4424 5111 5019 4957 4809 4138 3827 4386 3806 4880 6667 5246 3779 ]

Hypothetical CWM

   
A [ -0.01 -0.01 -0.01 0.01 0.03 -0.05 0.04 -0.02 -0.07 -0.02 0.01 -0.05 0.03 -0.09 -0.06 -0.04 0.07 -0.06 -0.04 -0.08 -0.03 -0.01 -0.00 0.02 0.01 0.02 0.00 0.00 ]
C [ 0.02 0.02 0.05 -0.00 0.03 0.04 -0.00 0.07 0.17 -0.03 0.16 0.20 0.11 0.14 0.21 0.03 -0.02 0.07 0.10 -0.03 -0.03 0.07 0.05 0.01 0.02 0.02 0.02 0.01 ]
G [ 0.03 0.03 0.01 0.02 0.03 0.04 0.06 0.08 -0.02 0.17 -0.03 -0.04 0.02 -0.07 -0.01 0.00 0.06 0.13 -0.03 0.20 0.13 -0.01 0.05 0.07 0.03 0.01 0.02 0.03 ]
T [ 0.01 0.01 -0.00 0.02 -0.02 0.04 -0.03 -0.03 0.03 -0.02 -0.06 -0.05 -0.08 0.06 -0.06 0.10 -0.03 -0.04 0.05 -0.03 -0.01 0.03 -0.02 -0.02 -0.00 0.01 0.01 -0.00 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_1

Num. of seqlets: 1335

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_2

Num. of seqlets: 611

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_4

Num. of seqlets: 363

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_5

Num. of seqlets: 152

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_8

Num. of seqlets: 62

CWM

PFM

     

HCWM

447 profiles found for the same TF (CTCF) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000001.1 CTCF ENCSR000AHD MCF-7 Homo sapiens MA0139.2
BP000002.1 CTCF ENCSR000AKB GM12878 Homo sapiens MA0139.2
BP000003.1 CTCF ENCSR000AKO K562 Homo sapiens MA0139.2
BP000004.1 CTCF ENCSR000ALA endothelial cell of umbilical vein Homo sapiens MA0139.2
BP000005.1 CTCF ENCSR000ALJ keratinocyte Homo sapiens MA0139.2
BP000006.1 CTCF ENCSR000ALV mammary epithelial cell Homo sapiens MA0139.2
BP000007.1 CTCF ENCSR000AMA HepG2 Homo sapiens MA0139.2
BP000008.1 CTCF ENCSR000AMF H1 Homo sapiens MA0139.2
BP000009.1 CTCF ENCSR000ANE skeletal muscle myoblast Homo sapiens MA0139.2
BP000010.1 CTCF ENCSR000ANO fibroblast of lung Homo sapiens MA0139.2
Showing 10 profiles of page 1 from 45 pages