Detailed information of deep learning profile BP000245.1

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This page shows detailed deep learning-derived predictions and motifs for CTCF in colonic mucosa using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: CTCF
Model ID: BP000245.1
Cell line/tissue: colonic mucosa
Class: C2H2 zinc finger factors
Family: More than 3 adjacent zinc fingers
JASPAR ID: MA0139.2
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: P49711  
Source: ENCSR380WJL
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ -0.00 -0.00 -0.01 0.00 -0.00 -0.00 0.02 -0.00 -0.01 0.08 -0.00 0.02 -0.00 -0.00 -0.00 -0.00 0.01 -0.00 -0.00 0.01 -0.00 ]
C [ 0.00 0.01 0.01 -0.00 0.09 0.17 -0.00 0.06 0.02 -0.00 -0.00 -0.00 -0.00 -0.00 0.00 0.09 -0.00 0.03 0.01 0.00 0.00 ]
G [ 0.00 -0.00 0.01 0.02 -0.00 -0.00 0.01 0.01 -0.00 0.00 0.17 0.07 0.05 0.16 0.11 -0.00 0.05 0.01 -0.00 0.01 0.00 ]
T [ 0.00 0.01 -0.00 -0.01 -0.00 -0.00 -0.00 -0.00 0.02 -0.00 -0.00 -0.00 0.00 -0.00 -0.00 -0.00 -0.00 -0.00 0.01 -0.00 0.01 ]

Frequency matrix

       
A [ 4247 3828 3624 5405 6794 4771 3580 4466 3615 4029 4733 4942 5143 5105 4370 2701 4221 5423 1838 393 13207 1171 2976 16177 227 7591 1084 341 555 2923 7967 1940 2740 6963 3501 5696 4225 4907 4454 4069 5119 6332 4125 4886 5275 5626 5138 4999 5054 4939 ]
C [ 4443 3233 4849 5724 3851 3530 2960 4510 7659 6580 5914 5284 4836 4238 4764 6127 3864 1947 14836 18441 873 10837 7261 449 65 112 609 147 863 13535 1147 9485 6298 4564 3735 3457 3376 5098 6256 7370 6072 3847 5092 4311 4166 4192 4310 4435 4736 4772 ]
G [ 4756 6569 6245 3380 4505 4406 4042 4177 2918 3188 4017 4309 4091 3723 4653 2705 6298 8162 1158 140 2403 6508 1372 1433 18683 11204 10505 18315 16056 825 8945 5617 1848 5353 4950 4135 7969 5097 4581 2728 2940 4952 5044 5154 4891 4183 4253 5231 5022 4919 ]
T [ 5649 5465 4377 4586 3945 6388 8513 5942 4903 5298 4431 4560 5025 6029 5308 7562 4712 3563 1263 121 2612 579 7486 1036 120 188 6897 292 1621 1812 1036 2053 8209 2215 6909 5807 3525 3993 3804 4928 4964 3964 4834 4744 4763 5094 5394 4430 4283 4465 ]

Hypothetical CWM

   
A [ 0.00 0.00 0.00 -0.00 -0.03 -0.02 0.02 -0.01 -0.03 0.04 -0.02 -0.02 0.09 -0.05 0.05 -0.06 -0.05 -0.05 -0.02 0.02 -0.03 -0.02 0.03 -0.02 0.02 -0.01 0.00 ]
C [ 0.03 0.01 0.01 0.02 0.05 0.04 -0.01 0.12 0.17 -0.03 0.11 0.05 -0.00 -0.02 -0.06 0.00 -0.04 -0.04 0.13 -0.02 0.06 0.04 0.03 0.02 0.01 0.01 0.02 ]
G [ 0.01 0.02 0.01 0.01 -0.00 0.04 0.06 -0.02 -0.02 0.08 0.05 -0.01 0.02 0.17 0.13 0.09 0.17 0.13 -0.03 0.12 0.04 -0.01 0.03 0.02 0.00 0.04 0.01 ]
T [ -0.00 0.00 0.01 0.01 0.02 -0.01 -0.02 -0.04 -0.07 -0.02 -0.05 0.06 -0.04 -0.03 -0.07 0.02 -0.04 0.00 -0.03 -0.06 -0.01 0.03 -0.04 0.02 0.00 -0.01 -0.01 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_2

Num. of seqlets: 133

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_3

Num. of seqlets: 127

CWM

PFM

     

HCWM

447 profiles found for the same TF (CTCF) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000001.1 CTCF ENCSR000AHD MCF-7 Homo sapiens MA0139.2
BP000002.1 CTCF ENCSR000AKB GM12878 Homo sapiens MA0139.2
BP000003.1 CTCF ENCSR000AKO K562 Homo sapiens MA0139.2
BP000004.1 CTCF ENCSR000ALA endothelial cell of umbilical vein Homo sapiens MA0139.2
BP000005.1 CTCF ENCSR000ALJ keratinocyte Homo sapiens MA0139.2
BP000006.1 CTCF ENCSR000ALV mammary epithelial cell Homo sapiens MA0139.2
BP000007.1 CTCF ENCSR000AMA HepG2 Homo sapiens MA0139.2
BP000008.1 CTCF ENCSR000AMF H1 Homo sapiens MA0139.2
BP000009.1 CTCF ENCSR000ANE skeletal muscle myoblast Homo sapiens MA0139.2
BP000010.1 CTCF ENCSR000ANO fibroblast of lung Homo sapiens MA0139.2
Showing 10 profiles of page 1 from 45 pages