Detailed information of deep learning profile BP000245.1

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This page shows detailed deep learning-derived predictions and motifs for CTCF in colonic mucosa using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: CTCF
Model ID: BP000245.1
Cell line/tissue: colonic mucosa
Class: C2H2 zinc finger factors
Family: More than 3 adjacent zinc fingers
JASPAR ID: MA0139.2
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: P49711  
Source: ENCSR380WJL
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ 0.01 -0.00 0.01 -0.00 -0.00 -0.00 -0.00 -0.00 0.00 -0.00 -0.00 -0.00 0.02 -0.00 -0.00 -0.00 -0.00 -0.01 -0.00 0.01 0.00 ]
C [ 0.00 0.01 -0.00 0.01 0.05 -0.00 0.11 0.16 0.05 0.07 0.17 0.00 -0.00 0.01 0.01 -0.00 -0.00 0.02 0.01 -0.00 0.00 ]
G [ 0.00 0.00 0.01 0.03 -0.00 0.09 0.00 -0.00 -0.00 -0.00 -0.00 -0.00 0.02 0.06 -0.00 0.17 0.09 -0.00 0.01 0.01 0.00 ]
T [ -0.00 0.01 -0.00 -0.00 0.01 -0.00 -0.00 -0.00 -0.00 0.02 -0.00 0.08 -0.01 -0.00 0.02 -0.00 -0.00 0.00 -0.01 -0.00 -0.00 ]

Frequency matrix

       
A [ 4465 4283 4430 5394 5094 4763 4744 4834 3964 4964 4928 3804 3993 3525 5807 6909 2215 8209 2053 1036 1812 1621 292 6897 188 120 1036 7486 579 2612 121 1263 3563 4712 7562 5308 6029 5025 4560 4431 5298 4903 5942 8513 6388 3945 4586 4377 5465 5649 ]
C [ 4919 5022 5231 4253 4183 4891 5154 5044 4952 2940 2728 4581 5097 7969 4135 4950 5353 1848 5617 8945 825 16056 18315 10505 11204 18683 1433 1372 6508 2403 140 1158 8162 6298 2705 4653 3723 4091 4309 4017 3188 2918 4177 4042 4406 4505 3380 6245 6569 4756 ]
G [ 4772 4736 4435 4310 4192 4166 4311 5092 3847 6072 7370 6256 5098 3376 3457 3735 4564 6298 9485 1147 13535 863 147 609 112 65 449 7261 10837 873 18441 14836 1947 3864 6127 4764 4238 4836 5284 5914 6580 7659 4510 2960 3530 3851 5724 4849 3233 4443 ]
T [ 4939 5054 4999 5138 5626 5275 4886 4125 6332 5119 4069 4454 4907 4225 5696 3501 6963 2740 1940 7967 2923 555 341 1084 7591 227 16177 2976 1171 13207 393 1838 5423 4221 2701 4370 5105 5143 4942 4733 4029 3615 4466 3580 4771 6794 5405 3624 3828 4247 ]

Hypothetical CWM

   
A [ -0.01 -0.01 0.00 0.02 -0.04 0.03 -0.01 -0.06 -0.03 0.00 -0.04 0.02 -0.07 -0.03 -0.04 0.06 -0.05 -0.02 -0.07 -0.04 -0.02 -0.01 0.02 0.01 0.01 0.00 -0.00 ]
C [ 0.01 0.04 0.00 0.02 0.03 -0.01 0.04 0.12 -0.03 0.13 0.17 0.09 0.13 0.17 0.02 -0.01 0.05 0.08 -0.02 -0.02 0.06 0.04 -0.00 0.01 0.01 0.02 0.01 ]
G [ 0.02 0.01 0.01 0.02 0.03 0.04 0.06 -0.02 0.13 -0.04 -0.04 0.00 -0.06 -0.02 -0.00 0.05 0.11 -0.03 0.17 0.12 -0.01 0.04 0.05 0.02 0.01 0.01 0.03 ]
T [ 0.00 -0.01 0.02 -0.02 0.03 -0.02 -0.03 0.02 -0.02 -0.05 -0.05 -0.06 0.05 -0.05 0.09 -0.02 -0.02 0.04 -0.03 -0.01 0.02 -0.02 -0.03 -0.00 0.00 0.00 0.00 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_2

Num. of seqlets: 133

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_3

Num. of seqlets: 127

CWM

PFM

     

HCWM

447 profiles found for the same TF (CTCF) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000041.1 CTCF ENCSR000DMA K562 Homo sapiens MA0139.2
BP000042.1 CTCF ENCSR000DMC kidney Homo sapiens MA0139.2
BP000043.1 CTCF ENCSR000DME LNCaP clone FGC Homo sapiens MA0139.2
BP000044.1 CTCF ENCSR000DMF LNCaP clone FGC Homo sapiens MA0139.2
BP000045.1 CTCF ENCSR000DMH lung Homo sapiens MA0139.2
BP000046.1 CTCF ENCSR000DML MCF-7 Homo sapiens MA0139.2
BP000047.1 CTCF ENCSR000DMO MCF-7 Homo sapiens MA0139.2
BP000048.1 CTCF ENCSR000DMR MCF-7 Homo sapiens MA0139.2
BP000049.1 CTCF ENCSR000DMS MCF-7 Homo sapiens MA0139.2
BP000050.1 CTCF ENCSR000DMV MCF-7 Homo sapiens MA0139.2
Showing 10 profiles of page 5 from 45 pages