Detailed information of deep learning profile BP000244.1

This page shows detailed deep learning-derived predictions and motifs for CTCF in middle frontal area 46 using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: CTCF
Model ID: BP000244.1
Cell line/tissue: middle frontal area 46
Class: C2H2 zinc finger factors
Family: More than 3 adjacent zinc fingers
JASPAR ID: MA0139.2
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: P49711  
Source: ENCSR378KET
Model: BPNet
Download trained model
Download TF-MoDISco Report

Contribution weight matrix (CWM)

A [ 0.01 -0.00 0.01 -0.00 -0.00 -0.00 -0.00 -0.00 0.01 -0.00 -0.00 -0.00 0.02 -0.00 -0.01 -0.00 -0.00 -0.01 -0.00 0.01 0.00 ]
C [ 0.00 0.01 -0.00 0.01 0.06 -0.00 0.13 0.20 0.06 0.07 0.21 0.00 -0.00 0.01 0.01 -0.00 -0.00 0.03 0.01 -0.00 0.00 ]
G [ 0.00 0.01 0.01 0.04 -0.00 0.11 0.00 -0.00 0.00 0.00 -0.00 -0.00 0.02 0.07 -0.00 0.20 0.10 -0.00 0.01 0.01 0.00 ]
T [ -0.01 0.01 -0.00 -0.00 0.01 -0.00 -0.00 -0.00 -0.00 0.02 -0.00 0.08 -0.01 -0.00 0.03 -0.00 -0.00 0.00 -0.01 -0.01 -0.00 ]

Frequency matrix

A [ 4320 4354 4126 4042 4242 4980 4694 4387 4351 4525 3889 4682 4561 3660 3913 3352 5562 6642 2175 7744 2061 1009 1601 1521 238 6034 213 193 1381 7074 725 2704 272 1487 3372 4352 6597 4827 5322 4605 4368 4307 4742 4637 5401 7228 5743 3928 4260 4290 ]
C [ 4845 4633 4815 4851 4965 4214 4132 4769 5000 4962 4860 3114 2903 4616 4907 7531 3905 4629 5341 1949 5299 8944 728 15424 17630 10343 10858 17655 1820 1592 6581 2862 295 1529 7800 5814 3011 4639 3886 4217 4370 4114 3466 3190 4210 4093 4350 4347 3683 5695 ]
G [ 4585 4604 4540 4655 4387 4279 4147 4238 4246 4916 3800 5647 6757 5837 4795 3358 3486 3769 4327 5910 9179 1024 13106 842 81 702 193 85 558 6529 9472 1170 16971 13258 2262 3994 5903 4679 4264 4765 5021 5381 6137 6867 4520 3279 3668 3890 5453 4639 ]
T [ 4496 4655 4765 4698 4652 4773 5273 4852 4649 3843 5697 4803 4025 4133 4631 4005 5293 3206 6403 2643 1707 7269 2811 459 297 1167 6982 313 14487 3051 1468 11510 708 1972 4812 4086 2735 4101 4774 4659 4487 4444 3901 3552 4115 3646 4485 6081 4850 3622 ]

Hypothetical CWM

A [ -0.01 -0.01 0.01 0.03 -0.04 0.03 -0.01 -0.07 -0.03 0.01 -0.05 0.03 -0.09 -0.04 -0.04 0.07 -0.06 -0.03 -0.08 -0.03 -0.02 -0.01 0.03 0.01 0.01 0.00 0.00 ]
C [ 0.02 0.05 0.00 0.02 0.04 -0.01 0.06 0.16 -0.03 0.16 0.20 0.12 0.14 0.21 0.03 -0.02 0.06 0.10 -0.02 -0.03 0.07 0.05 0.01 0.02 0.02 0.02 0.01 ]
G [ 0.02 0.01 0.01 0.02 0.04 0.06 0.08 -0.02 0.16 -0.02 -0.05 0.01 -0.05 -0.02 0.01 0.07 0.13 -0.03 0.20 0.13 -0.01 0.05 0.06 0.02 0.01 0.02 0.03 ]
T [ 0.00 -0.00 0.02 -0.02 0.03 -0.02 -0.03 0.03 -0.02 -0.07 -0.05 -0.08 0.06 -0.05 0.10 -0.02 -0.02 0.04 -0.03 -0.01 0.02 -0.02 -0.03 -0.00 0.01 0.01 -0.00 ]

Other motifs identified by TF-MoDISco

Motif name: counts.pos_patterns.pattern_1

Num. of seqlets: 4329

Motif name: counts.pos_patterns.pattern_2

Num. of seqlets: 550

Motif name: counts.pos_patterns.pattern_3

Num. of seqlets: 244

Motif name: counts.pos_patterns.pattern_4

Num. of seqlets: 189

Motif name: counts.pos_patterns.pattern_5

Num. of seqlets: 129

447 profiles found for the same TF (CTCF) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000001.1 CTCF ENCSR000AHD MCF-7 Homo sapiens MA0139.2
BP000002.1 CTCF ENCSR000AKB GM12878 Homo sapiens MA0139.2
BP000003.1 CTCF ENCSR000AKO K562 Homo sapiens MA0139.2
BP000004.1 CTCF ENCSR000ALA endothelial cell of umbilical vein Homo sapiens MA0139.2
BP000005.1 CTCF ENCSR000ALJ keratinocyte Homo sapiens MA0139.2
BP000006.1 CTCF ENCSR000ALV mammary epithelial cell Homo sapiens MA0139.2
BP000007.1 CTCF ENCSR000AMA HepG2 Homo sapiens MA0139.2
BP000008.1 CTCF ENCSR000AMF H1 Homo sapiens MA0139.2
BP000009.1 CTCF ENCSR000ANE skeletal muscle myoblast Homo sapiens MA0139.2
BP000010.1 CTCF ENCSR000ANO fibroblast of lung Homo sapiens MA0139.2
Showing 10 profiles of page 1 from 45 pages