Detailed information of deep learning profile BP000244.1

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This page shows detailed deep learning-derived predictions and motifs for CTCF in middle frontal area 46 using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: CTCF
Model ID: BP000244.1
Cell line/tissue: middle frontal area 46
Class: C2H2 zinc finger factors
Family: More than 3 adjacent zinc fingers
JASPAR ID: MA0139.2
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: P49711  
Source: ENCSR378KET
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ -0.00 -0.01 -0.01 0.00 -0.00 -0.00 0.03 -0.00 -0.01 0.08 -0.00 0.02 -0.00 -0.00 -0.00 -0.00 0.01 -0.00 -0.00 0.01 -0.01 ]
C [ 0.00 0.01 0.01 -0.00 0.10 0.20 -0.00 0.07 0.02 -0.00 -0.00 0.00 0.00 -0.00 0.00 0.11 -0.00 0.04 0.01 0.01 0.00 ]
G [ 0.00 -0.00 0.01 0.03 -0.00 -0.00 0.01 0.01 -0.00 0.00 0.21 0.07 0.06 0.20 0.13 -0.00 0.06 0.01 -0.00 0.01 0.00 ]
T [ 0.00 0.01 -0.00 -0.01 -0.00 -0.00 -0.01 -0.00 0.02 -0.00 -0.00 -0.00 0.01 -0.00 -0.00 -0.00 -0.00 -0.00 0.01 -0.00 0.01 ]

Frequency matrix

       
A [ 3622 4850 6081 4485 3646 4115 3552 3901 4444 4487 4659 4774 4101 2735 4086 4812 1972 708 11510 1468 3051 14487 313 6982 1167 297 459 2811 7269 1707 2643 6403 3206 5293 4005 4631 4133 4025 4803 5697 3843 4649 4852 5273 4773 4652 4698 4765 4655 4496 ]
C [ 4639 5453 3890 3668 3279 4520 6867 6137 5381 5021 4765 4264 4679 5903 3994 2262 13258 16971 1170 9472 6529 558 85 193 702 81 842 13106 1024 9179 5910 4327 3769 3486 3358 4795 5837 6757 5647 3800 4916 4246 4238 4147 4279 4387 4655 4540 4604 4585 ]
G [ 5695 3683 4347 4350 4093 4210 3190 3466 4114 4370 4217 3886 4639 3011 5814 7800 1529 295 2862 6581 1592 1820 17655 10858 10343 17630 15424 728 8944 5299 1949 5341 4629 3905 7531 4907 4616 2903 3114 4860 4962 5000 4769 4132 4214 4965 4851 4815 4633 4845 ]
T [ 4290 4260 3928 5743 7228 5401 4637 4742 4307 4368 4605 5322 4827 6597 4352 3372 1487 272 2704 725 7074 1381 193 213 6034 238 1521 1601 1009 2061 7744 2175 6642 5562 3352 3913 3660 4561 4682 3889 4525 4351 4387 4694 4980 4242 4042 4126 4354 4320 ]

Hypothetical CWM

   
A [ -0.00 0.01 0.01 -0.00 -0.03 -0.02 0.02 -0.01 -0.03 0.04 -0.02 -0.02 0.10 -0.05 0.06 -0.08 -0.05 -0.07 -0.02 0.03 -0.03 -0.02 0.03 -0.02 0.02 -0.00 0.00 ]
C [ 0.03 0.02 0.01 0.02 0.06 0.05 -0.01 0.13 0.20 -0.03 0.13 0.07 0.01 -0.02 -0.05 0.01 -0.05 -0.02 0.16 -0.02 0.08 0.06 0.04 0.02 0.01 0.01 0.02 ]
G [ 0.01 0.02 0.02 0.02 0.01 0.05 0.07 -0.03 -0.02 0.10 0.06 -0.02 0.03 0.21 0.14 0.12 0.20 0.16 -0.03 0.16 0.06 -0.01 0.04 0.02 0.00 0.05 0.02 ]
T [ 0.00 0.00 0.01 0.01 0.03 -0.01 -0.02 -0.03 -0.08 -0.03 -0.06 0.07 -0.04 -0.04 -0.09 0.03 -0.05 0.01 -0.03 -0.07 -0.01 0.03 -0.04 0.03 0.01 -0.01 -0.01 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_1

Num. of seqlets: 4329

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_2

Num. of seqlets: 550

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_3

Num. of seqlets: 244

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_4

Num. of seqlets: 189

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_5

Num. of seqlets: 129

CWM

PFM

     

HCWM

447 profiles found for the same TF (CTCF) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000001.1 CTCF ENCSR000AHD MCF-7 Homo sapiens MA0139.2
BP000002.1 CTCF ENCSR000AKB GM12878 Homo sapiens MA0139.2
BP000003.1 CTCF ENCSR000AKO K562 Homo sapiens MA0139.2
BP000004.1 CTCF ENCSR000ALA endothelial cell of umbilical vein Homo sapiens MA0139.2
BP000005.1 CTCF ENCSR000ALJ keratinocyte Homo sapiens MA0139.2
BP000006.1 CTCF ENCSR000ALV mammary epithelial cell Homo sapiens MA0139.2
BP000007.1 CTCF ENCSR000AMA HepG2 Homo sapiens MA0139.2
BP000008.1 CTCF ENCSR000AMF H1 Homo sapiens MA0139.2
BP000009.1 CTCF ENCSR000ANE skeletal muscle myoblast Homo sapiens MA0139.2
BP000010.1 CTCF ENCSR000ANO fibroblast of lung Homo sapiens MA0139.2
Showing 10 profiles of page 1 from 45 pages