Detailed information of deep learning profile BP000243.1

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This page shows detailed deep learning-derived predictions and motifs for CTCF in middle frontal area 46 using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: CTCF
Model ID: BP000243.1
Cell line/tissue: middle frontal area 46
Class: C2H2 zinc finger factors
Family: More than 3 adjacent zinc fingers
JASPAR ID: MA0139.2
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: P49711  
Source: ENCSR378BVM
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ 0.01 -0.00 0.02 -0.00 -0.00 -0.00 -0.00 -0.00 0.01 -0.00 -0.00 -0.00 0.02 -0.00 -0.01 -0.00 -0.00 -0.01 -0.00 0.01 -0.00 ]
C [ 0.00 0.01 -0.00 0.01 0.06 -0.00 0.13 0.19 0.06 0.08 0.20 0.00 -0.00 0.01 0.01 -0.00 -0.00 0.02 0.01 -0.00 0.00 ]
G [ 0.00 0.01 0.01 0.04 -0.00 0.11 0.00 -0.00 0.00 -0.00 -0.00 -0.00 0.02 0.07 -0.00 0.19 0.10 -0.00 0.01 0.01 0.00 ]
T [ -0.00 0.01 -0.00 -0.00 0.01 -0.00 -0.00 -0.00 -0.00 0.02 -0.00 0.08 -0.01 -0.00 0.03 -0.00 -0.00 0.00 -0.01 -0.00 -0.00 ]

Frequency matrix

       
A [ 4516 4286 4466 5267 4951 4694 4657 4847 4188 4985 4956 3943 4250 3652 5838 7006 2478 8145 2301 1285 1805 1686 341 6284 282 216 1578 7487 810 3069 304 1576 3602 4627 6816 5114 5596 4907 4660 4573 5023 4839 5713 7614 5967 4120 4573 4471 5415 5560 ]
C [ 5115 5223 5310 4573 4595 5166 5296 5297 5146 3497 3220 5056 5348 7851 4338 5011 5696 2242 5682 9290 954 16092 18602 10920 11873 18843 2187 1792 6996 3323 339 1653 8196 6067 3299 4871 4192 4530 4794 4485 3826 3450 4540 4467 4691 4686 3927 6183 6347 4939 ]
G [ 4948 4937 4809 4597 4567 4553 4631 5256 4257 5963 7032 6202 5047 3705 3871 4123 4704 6250 9654 1363 13613 1136 180 880 194 84 610 6989 10070 1321 17909 14115 2530 4410 6411 5136 4697 5184 5377 5796 6546 7381 4846 3635 4026 4279 5864 5014 3783 4649 ]
T [ 4959 5092 4953 5101 5425 5125 4954 4138 5947 5093 4330 4337 4893 4330 5491 3398 6660 2901 1901 7600 3166 624 415 1454 7189 395 15163 3270 1662 11825 986 2194 5210 4434 3012 4417 5053 4917 4707 4684 4143 3868 4439 3822 4854 6453 5174 3870 3993 4390 ]

Hypothetical CWM

   
A [ -0.01 -0.01 0.01 0.03 -0.04 0.04 -0.01 -0.07 -0.03 0.01 -0.04 0.03 -0.08 -0.04 -0.03 0.07 -0.06 -0.03 -0.09 -0.03 -0.02 -0.00 0.02 0.00 0.01 -0.00 -0.00 ]
C [ 0.02 0.05 0.01 0.03 0.04 -0.00 0.06 0.15 -0.02 0.15 0.19 0.12 0.15 0.20 0.03 -0.01 0.06 0.09 -0.02 -0.03 0.07 0.04 0.01 0.02 0.02 0.02 0.01 ]
G [ 0.02 0.01 0.01 0.02 0.04 0.05 0.08 -0.02 0.15 -0.03 -0.04 0.01 -0.06 -0.02 0.01 0.07 0.14 -0.01 0.20 0.13 -0.01 0.04 0.06 0.03 0.01 0.02 0.03 ]
T [ 0.00 -0.00 0.01 -0.02 0.03 -0.02 -0.03 0.03 -0.02 -0.05 -0.05 -0.08 0.06 -0.05 0.10 -0.01 -0.02 0.04 -0.02 -0.01 0.02 -0.02 -0.02 0.00 0.01 0.01 0.00 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_1

Num. of seqlets: 1215

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_2

Num. of seqlets: 577

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_3

Num. of seqlets: 535

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_4

Num. of seqlets: 420

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_5

Num. of seqlets: 404

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_6

Num. of seqlets: 306

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_7

Num. of seqlets: 144

CWM

PFM

     

HCWM

447 profiles found for the same TF (CTCF) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000001.1 CTCF ENCSR000AHD MCF-7 Homo sapiens MA0139.2
BP000002.1 CTCF ENCSR000AKB GM12878 Homo sapiens MA0139.2
BP000003.1 CTCF ENCSR000AKO K562 Homo sapiens MA0139.2
BP000004.1 CTCF ENCSR000ALA endothelial cell of umbilical vein Homo sapiens MA0139.2
BP000005.1 CTCF ENCSR000ALJ keratinocyte Homo sapiens MA0139.2
BP000006.1 CTCF ENCSR000ALV mammary epithelial cell Homo sapiens MA0139.2
BP000007.1 CTCF ENCSR000AMA HepG2 Homo sapiens MA0139.2
BP000008.1 CTCF ENCSR000AMF H1 Homo sapiens MA0139.2
BP000009.1 CTCF ENCSR000ANE skeletal muscle myoblast Homo sapiens MA0139.2
BP000010.1 CTCF ENCSR000ANO fibroblast of lung Homo sapiens MA0139.2
Showing 10 profiles of page 1 from 45 pages