Detailed information of deep learning profile BP000242.1

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This page shows detailed deep learning-derived predictions and motifs for CTCF in heart right ventricle using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: CTCF
Model ID: BP000242.1
Cell line/tissue: heart right ventricle
Class: C2H2 zinc finger factors
Family: More than 3 adjacent zinc fingers
JASPAR ID: MA0139.2
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: P49711  
Source: ENCSR376EOW
Model: BPNet
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Sequence logo

 

Contribution weight matrix (CWM)

 
A [ -0.00 -0.00 -0.01 0.00 -0.00 -0.00 0.03 -0.00 -0.01 0.09 -0.00 0.02 -0.00 -0.00 -0.00 -0.00 0.01 -0.00 -0.00 0.01 -0.00 ]
C [ 0.00 0.01 0.01 -0.00 0.09 0.19 -0.00 0.06 0.02 -0.00 -0.00 -0.00 -0.00 -0.00 -0.00 0.10 -0.00 0.04 0.01 0.01 0.00 ]
G [ 0.00 -0.00 0.01 0.02 -0.00 -0.00 0.01 0.01 -0.00 0.00 0.19 0.08 0.06 0.19 0.12 -0.00 0.06 0.01 -0.00 0.01 0.00 ]
T [ -0.00 0.01 -0.00 -0.01 -0.00 -0.00 -0.01 -0.00 0.02 -0.00 -0.00 -0.00 0.01 -0.00 -0.00 -0.00 -0.00 -0.00 0.02 -0.00 0.01 ]

Frequency matrix

       
A [ 3621 4881 6338 4488 3576 4121 3589 3912 4522 4585 4619 4794 4158 2829 4210 4922 2039 812 11540 1461 2993 14911 301 6755 1392 395 601 3155 7248 1842 2760 6417 3258 5318 4040 4726 4147 4013 4823 5750 3940 4676 4858 5159 4871 4788 4860 4720 4762 4592 ]
C [ 4742 5648 3949 3783 3284 4551 7145 6252 5542 5155 4896 4394 4911 6122 4090 2327 13697 17262 1150 9574 7147 490 78 201 710 136 1065 12749 1331 9187 6078 4566 3914 3525 3486 4877 6036 6891 5764 3914 5062 4344 4259 4304 4384 4515 4682 4583 4662 4731 ]
G [ 5949 3683 4377 4559 4311 4425 3136 3620 4286 4494 4343 3931 4592 3065 5811 7856 1488 262 2952 6832 1612 1823 18067 11402 10535 17737 15325 944 8857 5352 2079 5376 4848 4092 7674 5093 4682 3034 3249 4961 5068 5182 4964 4348 4437 5062 4969 4977 4750 4935 ]
T [ 4270 4370 3918 5752 7411 5485 4712 4798 4232 4348 4724 5463 4921 6566 4471 3477 1358 246 2940 715 6830 1358 136 224 5945 314 1591 1734 1146 2201 7665 2223 6562 5647 3382 3886 3717 4644 4746 3957 4512 4380 4501 4771 4890 4217 4071 4302 4408 4324 ]

Hypothetical CWM

   
A [ 0.01 0.00 -0.02 -0.02 0.03 -0.01 -0.03 0.05 -0.03 -0.02 0.10 -0.05 0.06 -0.07 -0.05 -0.05 -0.02 0.03 -0.03 -0.02 0.04 -0.02 0.02 -0.00 0.00 ]
C [ 0.01 0.02 0.05 0.04 -0.01 0.13 0.20 -0.03 0.13 0.06 -0.01 -0.03 -0.08 -0.00 -0.06 -0.04 0.14 -0.02 0.08 0.05 0.03 0.01 0.01 0.01 0.02 ]
G [ 0.01 0.02 0.00 0.04 0.06 -0.03 -0.03 0.08 0.05 -0.02 0.02 0.20 0.15 0.12 0.20 0.14 -0.02 0.14 0.05 -0.01 0.03 0.02 0.00 0.05 0.02 ]
T [ 0.01 0.01 0.02 -0.00 -0.02 -0.03 -0.08 -0.03 -0.05 0.06 -0.04 -0.04 -0.09 0.03 -0.05 0.01 -0.03 -0.08 -0.01 0.04 -0.05 0.03 0.01 -0.01 -0.01 ]

447 profiles found for the same TF (CTCF) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000001.1 CTCF ENCSR000AHD MCF-7 Homo sapiens MA0139.2
BP000002.1 CTCF ENCSR000AKB GM12878 Homo sapiens MA0139.2
BP000003.1 CTCF ENCSR000AKO K562 Homo sapiens MA0139.2
BP000004.1 CTCF ENCSR000ALA endothelial cell of umbilical vein Homo sapiens MA0139.2
BP000005.1 CTCF ENCSR000ALJ keratinocyte Homo sapiens MA0139.2
BP000006.1 CTCF ENCSR000ALV mammary epithelial cell Homo sapiens MA0139.2
BP000007.1 CTCF ENCSR000AMA HepG2 Homo sapiens MA0139.2
BP000008.1 CTCF ENCSR000AMF H1 Homo sapiens MA0139.2
BP000009.1 CTCF ENCSR000ANE skeletal muscle myoblast Homo sapiens MA0139.2
BP000010.1 CTCF ENCSR000ANO fibroblast of lung Homo sapiens MA0139.2
Showing 10 profiles of page 1 from 45 pages