Detailed information of deep learning profile BP000242.1

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This page shows detailed deep learning-derived predictions and motifs for CTCF in heart right ventricle using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: CTCF
Model ID: BP000242.1
Cell line/tissue: heart right ventricle
Class: C2H2 zinc finger factors
Family: More than 3 adjacent zinc fingers
JASPAR ID: MA0139.2
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: P49711  
Source: ENCSR376EOW
Model: BPNet
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Sequence logo

 

Contribution weight matrix (CWM)

 
A [ 0.01 -0.00 0.02 -0.00 -0.00 -0.00 -0.00 -0.00 0.01 -0.00 -0.00 -0.00 0.02 -0.00 -0.01 -0.00 -0.00 -0.01 -0.00 0.01 -0.00 ]
C [ 0.00 0.01 -0.00 0.01 0.06 -0.00 0.12 0.19 0.06 0.08 0.19 0.00 -0.00 0.01 0.01 -0.00 -0.00 0.02 0.01 -0.00 0.00 ]
G [ 0.00 0.01 0.01 0.04 -0.00 0.10 -0.00 -0.00 -0.00 -0.00 -0.00 -0.00 0.02 0.06 -0.00 0.19 0.09 -0.00 0.01 0.01 0.00 ]
T [ -0.00 0.01 -0.00 -0.00 0.01 -0.00 -0.00 -0.00 -0.00 0.02 -0.00 0.09 -0.01 -0.00 0.03 -0.00 -0.00 0.00 -0.01 -0.00 -0.00 ]

Frequency matrix

       
A [ 4324 4408 4302 4071 4217 4890 4771 4501 4380 4512 3957 4746 4644 3717 3886 3382 5647 6562 2223 7665 2201 1146 1734 1591 314 5945 224 136 1358 6830 715 2940 246 1358 3477 4471 6566 4921 5463 4724 4348 4232 4798 4712 5485 7411 5752 3918 4370 4270 ]
C [ 4935 4750 4977 4969 5062 4437 4348 4964 5182 5068 4961 3249 3034 4682 5093 7674 4092 4848 5376 2079 5352 8857 944 15325 17737 10535 11402 18067 1823 1612 6832 2952 262 1488 7856 5811 3065 4592 3931 4343 4494 4286 3620 3136 4425 4311 4559 4377 3683 5949 ]
G [ 4731 4662 4583 4682 4515 4384 4304 4259 4344 5062 3914 5764 6891 6036 4877 3486 3525 3914 4566 6078 9187 1331 12749 1065 136 710 201 78 490 7147 9574 1150 17262 13697 2327 4090 6122 4911 4394 4896 5155 5542 6252 7145 4551 3284 3783 3949 5648 4742 ]
T [ 4592 4762 4720 4860 4788 4871 5159 4858 4676 3940 5750 4823 4013 4147 4726 4040 5318 3258 6417 2760 1842 7248 3155 601 395 1392 6755 301 14911 2993 1461 11540 812 2039 4922 4210 2829 4158 4794 4619 4585 4522 3912 3589 4121 3576 4488 6338 4881 3621 ]

Hypothetical CWM

   
A [ -0.01 -0.01 0.01 0.03 -0.05 0.04 -0.01 -0.08 -0.03 0.01 -0.05 0.03 -0.09 -0.04 -0.04 0.06 -0.05 -0.03 -0.08 -0.03 -0.02 -0.00 0.02 0.01 0.01 ]
C [ 0.02 0.05 0.00 0.02 0.03 -0.01 0.05 0.14 -0.02 0.14 0.20 0.12 0.15 0.20 0.02 -0.02 0.05 0.08 -0.03 -0.03 0.06 0.04 0.00 0.02 0.01 ]
G [ 0.02 0.01 0.01 0.01 0.03 0.05 0.08 -0.02 0.14 -0.04 -0.06 -0.00 -0.08 -0.03 -0.01 0.06 0.13 -0.03 0.20 0.13 -0.01 0.04 0.05 0.02 0.01 ]
T [ 0.00 -0.00 0.02 -0.02 0.04 -0.02 -0.03 0.03 -0.02 -0.05 -0.05 -0.07 0.06 -0.05 0.10 -0.02 -0.03 0.05 -0.03 -0.01 0.03 -0.02 -0.02 0.00 0.01 ]

447 profiles found for the same TF (CTCF) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000041.1 CTCF ENCSR000DMA K562 Homo sapiens MA0139.2
BP000042.1 CTCF ENCSR000DMC kidney Homo sapiens MA0139.2
BP000043.1 CTCF ENCSR000DME LNCaP clone FGC Homo sapiens MA0139.2
BP000044.1 CTCF ENCSR000DMF LNCaP clone FGC Homo sapiens MA0139.2
BP000045.1 CTCF ENCSR000DMH lung Homo sapiens MA0139.2
BP000046.1 CTCF ENCSR000DML MCF-7 Homo sapiens MA0139.2
BP000047.1 CTCF ENCSR000DMO MCF-7 Homo sapiens MA0139.2
BP000048.1 CTCF ENCSR000DMR MCF-7 Homo sapiens MA0139.2
BP000049.1 CTCF ENCSR000DMS MCF-7 Homo sapiens MA0139.2
BP000050.1 CTCF ENCSR000DMV MCF-7 Homo sapiens MA0139.2
Showing 10 profiles of page 5 from 45 pages