Detailed information of deep learning profile BP000241.1

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This page shows detailed deep learning-derived predictions and motifs for CTCF in Peyer's patch using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: CTCF
Model ID: BP000241.1
Cell line/tissue: Peyer's patch
Class: C2H2 zinc finger factors
Family: More than 3 adjacent zinc fingers
JASPAR ID: MA0139.2
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: P49711  
Source: ENCSR375VXU
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ -0.00 -0.00 -0.00 0.00 -0.00 -0.00 0.02 -0.00 -0.00 0.06 -0.00 0.01 -0.00 -0.00 -0.00 -0.00 0.01 -0.00 -0.00 0.01 -0.00 ]
C [ 0.00 0.01 0.00 -0.00 0.07 0.13 -0.00 0.04 0.01 -0.00 -0.00 -0.00 -0.00 -0.00 0.00 0.06 -0.00 0.02 0.01 0.00 0.00 ]
G [ 0.00 -0.00 0.01 0.01 -0.00 -0.00 0.01 0.01 -0.00 0.00 0.13 0.05 0.03 0.11 0.07 -0.00 0.03 0.01 -0.00 0.00 0.00 ]
T [ 0.00 0.00 -0.00 -0.00 -0.00 -0.00 -0.00 -0.00 0.02 -0.00 -0.00 -0.00 0.01 -0.00 -0.00 -0.00 -0.00 -0.00 0.01 -0.00 0.01 ]

Frequency matrix

       
A [ 4490 4035 3831 5370 6964 4938 3783 4690 3705 4240 4743 5001 4892 5026 4378 3130 4472 5527 2117 1165 11708 1577 3184 15441 352 6384 2149 763 1237 3797 7195 2593 3465 6463 3959 5599 4353 5013 4572 4448 5191 5835 4421 4917 5228 5338 5203 5087 5041 5028 ]
C [ 4849 3605 5083 6253 4237 4138 3598 4782 8057 6813 6106 5469 5279 4780 5428 6705 4448 2466 15022 18223 1220 10417 7860 610 142 356 1300 647 1944 12113 2131 8656 6040 4688 4269 4017 3912 5210 6169 6898 5833 4367 5268 4807 4778 4773 4791 4839 5054 5065 ]
G [ 5027 6540 6777 3800 4660 4908 4392 4566 3379 3765 4562 4691 4592 4163 4907 3160 6212 8276 1557 297 3522 7182 1831 2283 19228 12740 10374 17731 14772 1751 8898 5913 3005 5825 5404 4629 7793 5459 5075 3684 3873 5355 5500 5382 5190 4749 4811 5397 5410 5212 ]
T [ 5592 5778 4267 4535 4097 5974 8185 5920 4817 5140 4547 4797 5195 5989 5245 6963 4826 3689 1262 273 3508 782 7083 1624 236 478 6135 817 2005 2297 1734 2796 7448 2982 6326 5713 3900 4276 4142 4928 5061 4401 4769 4852 4762 5098 5153 4635 4453 4653 ]

Hypothetical CWM

   
A [ 0.00 0.00 -0.01 -0.01 0.02 -0.01 -0.02 0.03 -0.02 -0.02 0.07 -0.04 0.03 -0.04 -0.03 -0.04 -0.01 0.02 -0.01 -0.01 0.02 -0.01 0.01 0.00 0.00 ]
C [ 0.00 0.01 0.03 0.02 -0.01 0.09 0.14 -0.03 0.08 0.04 -0.01 -0.02 -0.06 -0.00 -0.03 -0.02 0.08 -0.01 0.04 0.03 0.02 0.01 0.01 0.00 0.01 ]
G [ 0.00 0.01 -0.00 0.03 0.04 -0.03 -0.03 0.05 0.04 -0.02 0.01 0.14 0.09 0.07 0.12 0.08 -0.02 0.09 0.03 -0.01 0.02 0.02 0.00 0.03 0.01 ]
T [ 0.01 0.01 0.01 -0.00 -0.01 -0.03 -0.06 -0.02 -0.05 0.05 -0.02 -0.03 -0.05 0.02 -0.03 0.01 -0.01 -0.04 -0.01 0.02 -0.03 0.02 0.01 -0.01 -0.00 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.neg_patterns.pattern_0

Num. of seqlets: 250

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_3

Num. of seqlets: 100

CWM

PFM

     

HCWM

447 profiles found for the same TF (CTCF) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000001.1 CTCF ENCSR000AHD MCF-7 Homo sapiens MA0139.2
BP000002.1 CTCF ENCSR000AKB GM12878 Homo sapiens MA0139.2
BP000003.1 CTCF ENCSR000AKO K562 Homo sapiens MA0139.2
BP000004.1 CTCF ENCSR000ALA endothelial cell of umbilical vein Homo sapiens MA0139.2
BP000005.1 CTCF ENCSR000ALJ keratinocyte Homo sapiens MA0139.2
BP000006.1 CTCF ENCSR000ALV mammary epithelial cell Homo sapiens MA0139.2
BP000007.1 CTCF ENCSR000AMA HepG2 Homo sapiens MA0139.2
BP000008.1 CTCF ENCSR000AMF H1 Homo sapiens MA0139.2
BP000009.1 CTCF ENCSR000ANE skeletal muscle myoblast Homo sapiens MA0139.2
BP000010.1 CTCF ENCSR000ANO fibroblast of lung Homo sapiens MA0139.2
Showing 10 profiles of page 1 from 45 pages