Detailed information of deep learning profile BP000241.1

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This page shows detailed deep learning-derived predictions and motifs for CTCF in Peyer's patch using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: CTCF
Model ID: BP000241.1
Cell line/tissue: Peyer's patch
Class: C2H2 zinc finger factors
Family: More than 3 adjacent zinc fingers
JASPAR ID: MA0139.2
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: P49711  
Source: ENCSR375VXU
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ 0.01 -0.00 0.01 -0.00 -0.00 -0.00 -0.00 -0.00 0.01 -0.00 -0.00 -0.00 0.02 -0.00 -0.00 -0.00 -0.00 -0.00 -0.00 0.00 0.00 ]
C [ 0.00 0.00 -0.00 0.01 0.03 -0.00 0.07 0.11 0.03 0.05 0.13 0.00 -0.00 0.01 0.01 -0.00 -0.00 0.01 0.01 -0.00 0.00 ]
G [ 0.00 0.00 0.01 0.02 -0.00 0.06 0.00 -0.00 -0.00 -0.00 -0.00 -0.00 0.01 0.04 -0.00 0.13 0.07 -0.00 0.00 0.01 0.00 ]
T [ -0.00 0.01 -0.00 -0.00 0.01 -0.00 -0.00 -0.00 -0.00 0.01 -0.00 0.06 -0.00 -0.00 0.02 -0.00 -0.00 0.00 -0.00 -0.00 -0.00 ]

Frequency matrix

       
A [ 4653 4453 4635 5153 5098 4762 4852 4769 4401 5061 4928 4142 4276 3900 5713 6326 2982 7448 2796 1734 2297 2005 817 6135 478 236 1624 7083 782 3508 273 1262 3689 4826 6963 5245 5989 5195 4797 4547 5140 4817 5920 8185 5974 4097 4535 4267 5778 5592 ]
C [ 5212 5410 5397 4811 4749 5190 5382 5500 5355 3873 3684 5075 5459 7793 4629 5404 5825 3005 5913 8898 1751 14772 17731 10374 12740 19228 2283 1831 7182 3522 297 1557 8276 6212 3160 4907 4163 4592 4691 4562 3765 3379 4566 4392 4908 4660 3800 6777 6540 5027 ]
G [ 5065 5054 4839 4791 4773 4778 4807 5268 4367 5833 6898 6169 5210 3912 4017 4269 4688 6040 8656 2131 12113 1944 647 1300 356 142 610 7860 10417 1220 18223 15022 2466 4448 6705 5428 4780 5279 5469 6106 6813 8057 4782 3598 4138 4237 6253 5083 3605 4849 ]
T [ 5028 5041 5087 5203 5338 5228 4917 4421 5835 5191 4448 4572 5013 4353 5599 3959 6463 3465 2593 7195 3797 1237 763 2149 6384 352 15441 3184 1577 11708 1165 2117 5527 4472 3130 4378 5026 4892 5001 4743 4240 3705 4690 3783 4938 6964 5370 3831 4035 4490 ]

Hypothetical CWM

   
A [ -0.00 -0.01 0.01 0.02 -0.03 0.02 -0.01 -0.04 -0.01 0.01 -0.03 0.02 -0.05 -0.03 -0.02 0.05 -0.05 -0.02 -0.06 -0.03 -0.01 -0.00 0.01 0.01 0.01 ]
C [ 0.01 0.03 0.00 0.02 0.02 -0.01 0.03 0.09 -0.02 0.08 0.12 0.07 0.09 0.14 0.01 -0.02 0.04 0.05 -0.03 -0.03 0.04 0.03 -0.00 0.01 0.00 ]
G [ 0.01 0.00 0.01 0.01 0.02 0.03 0.04 -0.01 0.08 -0.02 -0.03 -0.00 -0.06 -0.02 -0.01 0.04 0.08 -0.03 0.14 0.09 -0.01 0.02 0.03 0.01 0.00 ]
T [ 0.00 0.00 0.01 -0.01 0.02 -0.01 -0.01 0.02 -0.01 -0.04 -0.03 -0.04 0.03 -0.04 0.07 -0.02 -0.02 0.03 -0.02 -0.01 0.02 -0.01 -0.01 0.00 0.00 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.neg_patterns.pattern_0

Num. of seqlets: 250

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_3

Num. of seqlets: 100

CWM

PFM

     

HCWM

447 profiles found for the same TF (CTCF) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000041.1 CTCF ENCSR000DMA K562 Homo sapiens MA0139.2
BP000042.1 CTCF ENCSR000DMC kidney Homo sapiens MA0139.2
BP000043.1 CTCF ENCSR000DME LNCaP clone FGC Homo sapiens MA0139.2
BP000044.1 CTCF ENCSR000DMF LNCaP clone FGC Homo sapiens MA0139.2
BP000045.1 CTCF ENCSR000DMH lung Homo sapiens MA0139.2
BP000046.1 CTCF ENCSR000DML MCF-7 Homo sapiens MA0139.2
BP000047.1 CTCF ENCSR000DMO MCF-7 Homo sapiens MA0139.2
BP000048.1 CTCF ENCSR000DMR MCF-7 Homo sapiens MA0139.2
BP000049.1 CTCF ENCSR000DMS MCF-7 Homo sapiens MA0139.2
BP000050.1 CTCF ENCSR000DMV MCF-7 Homo sapiens MA0139.2
Showing 10 profiles of page 5 from 45 pages