Detailed information of deep learning profile BP000238.1

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This page shows detailed deep learning-derived predictions and motifs for CTCF in middle frontal area 46 using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: CTCF
Model ID: BP000238.1
Cell line/tissue: middle frontal area 46
Class: C2H2 zinc finger factors
Family: More than 3 adjacent zinc fingers
JASPAR ID: MA0139.2
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: P49711  
Source: ENCSR369RRE
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ -0.00 -0.01 -0.01 0.00 -0.00 -0.00 0.03 -0.00 -0.01 0.08 -0.00 0.02 -0.00 -0.00 -0.00 -0.00 0.01 -0.00 -0.00 0.01 -0.01 0.00 ]
C [ 0.00 0.01 0.01 -0.00 0.10 0.19 -0.00 0.06 0.02 0.00 -0.00 -0.00 0.00 -0.00 -0.00 0.11 -0.00 0.04 0.01 0.01 0.00 0.00 ]
G [ 0.00 -0.00 0.01 0.03 -0.00 -0.00 0.01 0.02 -0.00 0.00 0.20 0.08 0.06 0.19 0.14 -0.00 0.07 0.02 -0.00 0.01 0.00 -0.00 ]
T [ -0.00 0.01 -0.00 -0.01 -0.00 -0.00 -0.01 -0.00 0.02 -0.00 -0.00 -0.00 0.01 -0.00 -0.00 -0.00 -0.00 -0.00 0.01 -0.00 0.01 0.00 ]

Frequency matrix

       
A [ 3844 4916 6027 4550 3712 4210 3715 4045 4491 4572 4659 4852 4188 2923 4327 5029 2220 1052 11350 1676 3197 14574 356 7023 1366 351 474 3026 7471 1737 2759 6407 3233 5302 4036 4610 4213 4140 4807 5737 3981 4782 4991 5249 4887 4925 4803 4883 4780 4699 ]
C [ 4746 5461 4076 3934 3602 4666 6736 6118 5542 5060 4870 4494 4934 6071 4108 2396 13284 17036 1243 9524 6844 547 71 198 716 102 827 13286 1099 9151 6176 4438 4025 3608 3467 4873 6009 6777 5773 3957 5010 4407 4322 4291 4382 4469 4751 4682 4619 4708 ]
G [ 5673 3898 4480 4570 4375 4481 3500 3681 4265 4515 4452 3984 4651 3149 5849 7868 1650 320 3092 6687 1705 1998 18056 11240 10531 17966 15844 726 9016 5591 2055 5530 4722 4075 7636 5145 4709 3067 3303 4926 5114 5092 4929 4331 4397 5031 5023 4853 4871 4952 ]
T [ 4423 4411 4103 5632 6997 5329 4735 4842 4388 4539 4705 5356 4913 6543 4402 3393 1532 278 3001 799 6940 1567 203 225 6073 267 1541 1648 1100 2207 7696 2311 6706 5701 3547 4058 3755 4702 4803 4066 4581 4405 4444 4815 5020 4261 4109 4268 4416 4327 ]

Hypothetical CWM

   
A [ -0.00 0.01 0.00 0.00 -0.03 -0.02 0.02 -0.01 -0.03 0.04 -0.02 -0.02 0.09 -0.05 0.06 -0.08 -0.05 -0.06 -0.02 0.02 -0.03 -0.02 0.03 -0.02 0.01 -0.00 0.00 0.00 ]
C [ 0.03 0.02 0.02 0.03 0.06 0.05 -0.00 0.13 0.20 -0.01 0.13 0.07 0.02 -0.01 -0.05 0.02 -0.03 -0.02 0.17 -0.01 0.09 0.06 0.05 0.02 0.02 0.01 0.03 0.03 ]
G [ 0.01 0.02 0.02 0.03 0.01 0.05 0.08 -0.02 -0.02 0.10 0.07 -0.00 0.04 0.20 0.15 0.12 0.20 0.16 -0.02 0.16 0.06 0.01 0.05 0.03 0.01 0.05 0.02 0.02 ]
T [ 0.00 0.00 0.01 0.01 0.02 -0.01 -0.02 -0.03 -0.08 -0.03 -0.06 0.07 -0.04 -0.04 -0.09 0.03 -0.05 0.01 -0.03 -0.07 -0.01 0.03 -0.05 0.03 0.01 -0.01 -0.01 -0.01 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_2

Num. of seqlets: 1780

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_3

Num. of seqlets: 803

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_6

Num. of seqlets: 165

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_8

Num. of seqlets: 27

CWM

PFM

     

HCWM

447 profiles found for the same TF (CTCF) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000001.1 CTCF ENCSR000AHD MCF-7 Homo sapiens MA0139.2
BP000002.1 CTCF ENCSR000AKB GM12878 Homo sapiens MA0139.2
BP000003.1 CTCF ENCSR000AKO K562 Homo sapiens MA0139.2
BP000004.1 CTCF ENCSR000ALA endothelial cell of umbilical vein Homo sapiens MA0139.2
BP000005.1 CTCF ENCSR000ALJ keratinocyte Homo sapiens MA0139.2
BP000006.1 CTCF ENCSR000ALV mammary epithelial cell Homo sapiens MA0139.2
BP000007.1 CTCF ENCSR000AMA HepG2 Homo sapiens MA0139.2
BP000008.1 CTCF ENCSR000AMF H1 Homo sapiens MA0139.2
BP000009.1 CTCF ENCSR000ANE skeletal muscle myoblast Homo sapiens MA0139.2
BP000010.1 CTCF ENCSR000ANO fibroblast of lung Homo sapiens MA0139.2
Showing 10 profiles of page 1 from 45 pages