Detailed information of deep learning profile BP000238.1

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This page shows detailed deep learning-derived predictions and motifs for CTCF in middle frontal area 46 using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: CTCF
Model ID: BP000238.1
Cell line/tissue: middle frontal area 46
Class: C2H2 zinc finger factors
Family: More than 3 adjacent zinc fingers
JASPAR ID: MA0139.2
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: P49711  
Source: ENCSR369RRE
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ 0.00 0.01 -0.00 0.01 -0.00 -0.00 -0.00 -0.00 -0.00 0.01 -0.00 -0.00 -0.00 0.02 -0.00 -0.01 -0.00 -0.00 -0.01 -0.00 0.01 -0.00 ]
C [ -0.00 0.00 0.01 -0.00 0.02 0.07 -0.00 0.14 0.19 0.06 0.08 0.20 0.00 -0.00 0.02 0.01 -0.00 -0.00 0.03 0.01 -0.00 0.00 ]
G [ 0.00 0.00 0.01 0.01 0.04 -0.00 0.11 -0.00 -0.00 0.00 -0.00 -0.00 0.00 0.02 0.06 -0.00 0.19 0.10 -0.00 0.01 0.01 0.00 ]
T [ 0.00 -0.01 0.01 -0.00 -0.00 0.01 -0.00 -0.00 -0.00 -0.00 0.02 -0.00 0.08 -0.01 -0.00 0.03 -0.00 -0.00 0.00 -0.01 -0.01 -0.00 ]

Frequency matrix

       
A [ 4327 4416 4268 4109 4261 5020 4815 4444 4405 4581 4066 4803 4702 3755 4058 3547 5701 6706 2311 7696 2207 1100 1648 1541 267 6073 225 203 1567 6940 799 3001 278 1532 3393 4402 6543 4913 5356 4705 4539 4388 4842 4735 5329 6997 5632 4103 4411 4423 ]
C [ 4952 4871 4853 5023 5031 4397 4331 4929 5092 5114 4926 3303 3067 4709 5145 7636 4075 4722 5530 2055 5591 9016 726 15844 17966 10531 11240 18056 1998 1705 6687 3092 320 1650 7868 5849 3149 4651 3984 4452 4515 4265 3681 3500 4481 4375 4570 4480 3898 5673 ]
G [ 4708 4619 4682 4751 4469 4382 4291 4322 4407 5010 3957 5773 6777 6009 4873 3467 3608 4025 4438 6176 9151 1099 13286 827 102 716 198 71 547 6844 9524 1243 17036 13284 2396 4108 6071 4934 4494 4870 5060 5542 6118 6736 4666 3602 3934 4076 5461 4746 ]
T [ 4699 4780 4883 4803 4925 4887 5249 4991 4782 3981 5737 4807 4140 4213 4610 4036 5302 3233 6407 2759 1737 7471 3026 474 351 1366 7023 356 14574 3197 1676 11350 1052 2220 5029 4327 2923 4188 4852 4659 4572 4491 4045 3715 4210 3712 4550 6027 4916 3844 ]

Hypothetical CWM

   
A [ -0.01 -0.01 -0.01 0.01 0.03 -0.05 0.03 -0.01 -0.07 -0.03 0.01 -0.05 0.03 -0.09 -0.04 -0.04 0.07 -0.06 -0.03 -0.08 -0.03 -0.02 -0.01 0.02 0.01 0.01 0.00 0.00 ]
C [ 0.02 0.02 0.05 0.01 0.03 0.05 0.01 0.06 0.16 -0.02 0.16 0.20 0.12 0.15 0.20 0.04 -0.00 0.07 0.10 -0.02 -0.02 0.08 0.05 0.01 0.03 0.02 0.02 0.01 ]
G [ 0.03 0.03 0.01 0.02 0.02 0.05 0.06 0.09 -0.01 0.17 -0.02 -0.03 0.02 -0.05 -0.01 0.02 0.07 0.13 -0.01 0.20 0.13 -0.00 0.05 0.06 0.03 0.02 0.02 0.03 ]
T [ 0.00 0.00 -0.00 0.01 -0.02 0.03 -0.02 -0.03 0.02 -0.02 -0.06 -0.05 -0.08 0.06 -0.05 0.09 -0.02 -0.02 0.04 -0.03 -0.01 0.02 -0.02 -0.03 0.00 0.00 0.01 -0.00 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_2

Num. of seqlets: 1780

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_3

Num. of seqlets: 803

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_6

Num. of seqlets: 165

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_8

Num. of seqlets: 27

CWM

PFM

     

HCWM

447 profiles found for the same TF (CTCF) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000001.1 CTCF ENCSR000AHD MCF-7 Homo sapiens MA0139.2
BP000002.1 CTCF ENCSR000AKB GM12878 Homo sapiens MA0139.2
BP000003.1 CTCF ENCSR000AKO K562 Homo sapiens MA0139.2
BP000004.1 CTCF ENCSR000ALA endothelial cell of umbilical vein Homo sapiens MA0139.2
BP000005.1 CTCF ENCSR000ALJ keratinocyte Homo sapiens MA0139.2
BP000006.1 CTCF ENCSR000ALV mammary epithelial cell Homo sapiens MA0139.2
BP000007.1 CTCF ENCSR000AMA HepG2 Homo sapiens MA0139.2
BP000008.1 CTCF ENCSR000AMF H1 Homo sapiens MA0139.2
BP000009.1 CTCF ENCSR000ANE skeletal muscle myoblast Homo sapiens MA0139.2
BP000010.1 CTCF ENCSR000ANO fibroblast of lung Homo sapiens MA0139.2
Showing 10 profiles of page 1 from 45 pages