Detailed information of deep learning profile BP000237.1

  1. Home
  2. Deep Learning Profile > BP000237.1
This page shows detailed deep learning-derived predictions and motifs for CTCF in stomach using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: CTCF
Model ID: BP000237.1
Cell line/tissue: stomach
Class: C2H2 zinc finger factors
Family: More than 3 adjacent zinc fingers
JASPAR ID: MA0139.2
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: P49711  
Source: ENCSR361KVZ
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ 0.01 -0.00 0.01 -0.00 -0.00 -0.00 -0.00 -0.00 0.00 -0.00 -0.00 -0.00 0.01 -0.00 -0.00 -0.00 -0.00 -0.00 -0.00 0.01 -0.00 ]
C [ 0.00 0.00 -0.00 0.01 0.04 -0.00 0.09 0.13 0.04 0.05 0.13 0.00 -0.00 0.01 0.01 -0.00 -0.00 0.02 0.01 -0.00 0.00 ]
G [ 0.00 0.00 0.01 0.02 -0.00 0.07 0.00 -0.00 -0.00 -0.00 -0.00 -0.00 0.01 0.05 -0.00 0.13 0.07 -0.00 0.00 0.01 0.00 ]
T [ -0.00 0.01 -0.00 -0.00 0.01 -0.00 -0.00 -0.00 -0.00 0.02 -0.00 0.07 -0.00 -0.00 0.02 -0.00 -0.00 0.00 -0.00 -0.00 -0.00 ]

Frequency matrix

       
A [ 3976 3819 3895 4803 4494 4315 4197 4279 3500 4466 4357 3422 3568 3174 5127 6076 1919 7216 1705 935 1611 1442 240 6128 219 112 887 6707 482 2079 146 1088 3145 4081 6821 4690 5398 4446 3998 3865 4654 4340 5296 7756 5653 3404 4080 3867 4930 5009 ]
C [ 4525 4549 4841 3956 3854 4406 4717 4622 4656 2610 2528 4085 4581 7379 3762 4668 4972 1907 5272 8287 760 14480 16580 9535 10171 16876 1371 1283 5782 2606 155 1143 7510 5923 2618 4322 3524 3841 3984 3734 2990 2641 3881 3770 4047 4093 3137 5945 6104 4348 ]
G [ 4365 4384 4187 3920 3834 3978 3983 4785 3456 5657 6832 5745 4799 2993 3207 3489 4206 5722 8543 1049 12299 897 181 688 209 99 478 6641 10064 808 16516 13453 1816 3582 5547 4324 3830 4523 4937 5489 6213 7189 4246 2716 3287 3582 5484 4426 2962 4146 ]
T [ 4446 4560 4389 4633 5130 4613 4415 3626 5700 4579 3595 4060 4364 3766 5216 3079 6215 2467 1792 7041 2642 493 311 961 6713 225 14576 2681 984 11819 495 1628 4841 3726 2326 3976 4560 4502 4393 4224 3455 3142 3889 3070 4325 6233 4611 3074 3316 3809 ]

Hypothetical CWM

   
A [ -0.00 -0.01 0.00 0.02 -0.03 0.02 -0.01 -0.05 -0.02 0.01 -0.04 0.02 -0.06 -0.04 -0.04 0.04 -0.04 -0.03 -0.06 -0.03 -0.01 -0.00 0.02 0.01 0.01 0.00 -0.00 -0.00 -0.00 -0.00 0.00 0.02 0.00 -0.02 ]
C [ 0.01 0.03 0.00 0.02 0.03 -0.00 0.03 0.10 -0.02 0.10 0.13 0.07 0.10 0.13 0.02 -0.02 0.04 0.07 -0.02 -0.02 0.05 0.03 0.00 0.02 0.01 0.02 0.01 0.01 0.00 -0.01 0.01 0.01 0.01 0.01 ]
G [ 0.02 0.01 0.01 0.02 0.02 0.03 0.05 -0.02 0.10 -0.03 -0.03 0.01 -0.05 -0.01 -0.00 0.04 0.09 -0.03 0.14 0.09 -0.01 0.03 0.05 0.02 0.01 0.02 0.03 0.03 0.04 0.05 0.01 -0.01 -0.00 0.00 ]
T [ 0.00 -0.00 0.01 -0.01 0.02 -0.01 -0.01 0.02 -0.01 -0.04 -0.03 -0.05 0.04 -0.04 0.08 -0.01 -0.02 0.03 -0.02 -0.01 0.02 -0.02 -0.02 -0.00 0.00 0.00 -0.00 -0.00 -0.01 -0.02 -0.00 -0.01 -0.01 0.01 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_5

Num. of seqlets: 25

CWM

PFM

     

HCWM

447 profiles found for the same TF (CTCF) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000001.1 CTCF ENCSR000AHD MCF-7 Homo sapiens MA0139.2
BP000002.1 CTCF ENCSR000AKB GM12878 Homo sapiens MA0139.2
BP000003.1 CTCF ENCSR000AKO K562 Homo sapiens MA0139.2
BP000004.1 CTCF ENCSR000ALA endothelial cell of umbilical vein Homo sapiens MA0139.2
BP000005.1 CTCF ENCSR000ALJ keratinocyte Homo sapiens MA0139.2
BP000006.1 CTCF ENCSR000ALV mammary epithelial cell Homo sapiens MA0139.2
BP000007.1 CTCF ENCSR000AMA HepG2 Homo sapiens MA0139.2
BP000008.1 CTCF ENCSR000AMF H1 Homo sapiens MA0139.2
BP000009.1 CTCF ENCSR000ANE skeletal muscle myoblast Homo sapiens MA0139.2
BP000010.1 CTCF ENCSR000ANO fibroblast of lung Homo sapiens MA0139.2
Showing 10 profiles of page 1 from 45 pages