Detailed information of deep learning profile BP000237.1

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This page shows detailed deep learning-derived predictions and motifs for CTCF in stomach using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: CTCF
Model ID: BP000237.1
Cell line/tissue: stomach
Class: C2H2 zinc finger factors
Family: More than 3 adjacent zinc fingers
JASPAR ID: MA0139.2
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: P49711  
Source: ENCSR361KVZ
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ -0.00 -0.00 -0.00 0.00 -0.00 -0.00 0.02 -0.00 -0.00 0.07 -0.00 0.02 -0.00 -0.00 -0.00 -0.00 0.01 -0.00 -0.00 0.01 -0.00 ]
C [ 0.00 0.01 0.00 -0.00 0.07 0.13 -0.00 0.05 0.01 -0.00 -0.00 -0.00 -0.00 -0.00 0.00 0.07 -0.00 0.02 0.01 0.00 0.00 ]
G [ 0.00 -0.00 0.01 0.02 -0.00 -0.00 0.01 0.01 -0.00 0.00 0.13 0.05 0.04 0.13 0.09 -0.00 0.04 0.01 -0.00 0.00 0.00 ]
T [ -0.00 0.01 -0.00 -0.00 -0.00 -0.00 -0.00 -0.00 0.01 -0.00 -0.00 -0.00 0.00 -0.00 -0.00 -0.00 -0.00 -0.00 0.01 -0.00 0.01 ]

Frequency matrix

       
A [ 3809 3316 3074 4611 6233 4325 3070 3889 3142 3455 4224 4393 4502 4560 3976 2326 3726 4841 1628 495 11819 984 2681 14576 225 6713 961 311 493 2642 7041 1792 2467 6215 3079 5216 3766 4364 4060 3595 4579 5700 3626 4415 4613 5130 4633 4389 4560 4446 ]
C [ 4146 2962 4426 5484 3582 3287 2716 4246 7189 6213 5489 4937 4523 3830 4324 5547 3582 1816 13453 16516 808 10064 6641 478 99 209 688 181 897 12299 1049 8543 5722 4206 3489 3207 2993 4799 5745 6832 5657 3456 4785 3983 3978 3834 3920 4187 4384 4365 ]
G [ 4348 6104 5945 3137 4093 4047 3770 3881 2641 2990 3734 3984 3841 3524 4322 2618 5923 7510 1143 155 2606 5782 1283 1371 16876 10171 9535 16580 14480 760 8287 5272 1907 4972 4668 3762 7379 4581 4085 2528 2610 4656 4622 4717 4406 3854 3956 4841 4549 4525 ]
T [ 5009 4930 3867 4080 3404 5653 7756 5296 4340 4654 3865 3998 4446 5398 4690 6821 4081 3145 1088 146 2079 482 6707 887 112 219 6128 240 1442 1611 935 1705 7216 1919 6076 5127 3174 3568 3422 4357 4466 3500 4279 4197 4315 4494 4803 3895 3819 3976 ]

Hypothetical CWM

   
A [ 0.01 -0.01 -0.01 -0.00 -0.02 -0.01 -0.00 -0.00 0.00 0.00 -0.00 -0.02 -0.02 0.02 -0.01 -0.02 0.03 -0.02 -0.01 0.08 -0.04 0.04 -0.05 -0.03 -0.04 -0.01 0.02 -0.01 -0.01 0.02 -0.01 0.01 -0.00 0.00 ]
C [ 0.00 -0.00 -0.01 0.01 0.05 0.04 0.03 0.03 0.02 0.01 0.02 0.05 0.03 -0.01 0.09 0.14 -0.03 0.09 0.04 -0.00 -0.01 -0.05 0.01 -0.03 -0.03 0.10 -0.02 0.05 0.03 0.02 0.02 0.01 0.01 0.02 ]
G [ 0.01 0.01 0.01 0.01 -0.01 0.00 0.01 0.01 0.02 0.01 0.02 0.00 0.03 0.05 -0.02 -0.02 0.07 0.04 -0.02 0.02 0.13 0.10 0.07 0.13 0.10 -0.02 0.10 0.03 -0.00 0.03 0.02 0.00 0.03 0.01 ]
T [ -0.02 0.00 0.02 0.00 -0.00 -0.00 -0.00 -0.00 0.00 0.01 0.01 0.02 -0.00 -0.01 -0.03 -0.06 -0.03 -0.04 0.04 -0.04 -0.04 -0.06 0.02 -0.04 0.01 -0.02 -0.05 -0.01 0.02 -0.03 0.02 0.00 -0.01 -0.00 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_5

Num. of seqlets: 25

CWM

PFM

     

HCWM

447 profiles found for the same TF (CTCF) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000001.1 CTCF ENCSR000AHD MCF-7 Homo sapiens MA0139.2
BP000002.1 CTCF ENCSR000AKB GM12878 Homo sapiens MA0139.2
BP000003.1 CTCF ENCSR000AKO K562 Homo sapiens MA0139.2
BP000004.1 CTCF ENCSR000ALA endothelial cell of umbilical vein Homo sapiens MA0139.2
BP000005.1 CTCF ENCSR000ALJ keratinocyte Homo sapiens MA0139.2
BP000006.1 CTCF ENCSR000ALV mammary epithelial cell Homo sapiens MA0139.2
BP000007.1 CTCF ENCSR000AMA HepG2 Homo sapiens MA0139.2
BP000008.1 CTCF ENCSR000AMF H1 Homo sapiens MA0139.2
BP000009.1 CTCF ENCSR000ANE skeletal muscle myoblast Homo sapiens MA0139.2
BP000010.1 CTCF ENCSR000ANO fibroblast of lung Homo sapiens MA0139.2
Showing 10 profiles of page 1 from 45 pages