Detailed information of deep learning profile BP000234.1

  1. Home
  2. Deep Learning Profile > BP000234.1
This page shows detailed deep learning-derived predictions and motifs for CTCF in gastrocnemius medialis using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: CTCF
Model ID: BP000234.1
Cell line/tissue: gastrocnemius medialis
Class: C2H2 zinc finger factors
Family: More than 3 adjacent zinc fingers
JASPAR ID: MA0139.2
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: P49711  
Source: ENCSR355ALW
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ -0.00 -0.00 -0.00 0.00 -0.00 -0.00 0.02 -0.00 -0.00 0.07 -0.00 0.01 -0.00 -0.00 -0.00 -0.00 0.01 -0.00 -0.00 0.01 -0.00 ]
C [ 0.00 0.01 0.00 -0.00 0.08 0.14 -0.00 0.05 0.01 -0.00 -0.00 -0.00 -0.00 -0.00 0.00 0.07 -0.00 0.02 0.01 0.00 0.00 ]
G [ 0.00 -0.00 0.01 0.02 -0.00 -0.00 0.01 0.01 -0.00 0.00 0.15 0.06 0.04 0.14 0.08 -0.00 0.04 0.01 -0.00 0.00 0.00 ]
T [ -0.00 0.01 -0.00 -0.00 -0.00 -0.00 -0.00 -0.00 0.02 -0.00 -0.00 -0.00 0.01 -0.00 -0.00 -0.00 -0.00 -0.00 0.01 -0.00 0.01 ]

Frequency matrix

       
A [ 4055 3639 3433 4867 6237 4503 3572 4172 3436 3848 4381 4582 4707 4680 4107 2660 4022 5001 1801 739 11457 1268 2850 14714 276 6504 1277 255 742 3013 7048 2040 2817 6315 3288 5267 3975 4561 4186 3918 4662 5665 3964 4562 4812 5194 4714 4616 4694 4621 ]
C [ 4440 3517 4761 5703 3922 3738 3242 4459 7280 6399 5573 4965 4802 4331 4887 6071 3983 2202 14055 17220 1134 10058 7001 564 68 238 703 116 1380 12448 1614 8650 5787 4326 3844 3668 3478 4911 5895 6740 5771 4018 5019 4339 4261 4126 4302 4518 4608 4687 ]
G [ 4627 6098 5983 3535 4428 4511 4093 4279 3140 3398 4181 4444 4260 3811 4532 2851 6058 7740 1335 207 2931 6405 1602 1869 17853 11348 10408 17800 14657 1131 8526 5496 2320 5400 4985 4129 7444 4990 4544 3113 3304 4791 4858 5056 4886 4325 4352 4993 4932 4825 ]
T [ 5240 5108 4185 4257 3775 5610 7455 5452 4506 4717 4227 4371 4593 5540 4836 6780 4299 3419 1171 196 2840 631 6909 1215 165 272 5974 191 1583 1770 1174 2176 7438 2321 6245 5298 3465 3900 3737 4591 4625 3888 4521 4405 4403 4717 4994 4235 4128 4229 ]

Hypothetical CWM

   
A [ -0.00 0.00 0.00 0.00 -0.02 -0.01 0.02 -0.01 -0.03 0.03 -0.02 -0.02 0.08 -0.04 0.04 -0.05 -0.04 -0.04 -0.01 0.02 -0.02 -0.02 0.02 -0.02 0.01 -0.00 0.00 ]
C [ 0.02 0.01 0.01 0.02 0.04 0.03 -0.01 0.10 0.15 -0.03 0.10 0.04 -0.01 -0.02 -0.06 -0.00 -0.04 -0.02 0.10 -0.02 0.05 0.04 0.03 0.01 0.01 0.01 0.01 ]
G [ 0.01 0.01 0.01 0.01 -0.00 0.03 0.05 -0.02 -0.03 0.06 0.04 -0.02 0.02 0.15 0.11 0.08 0.14 0.10 -0.02 0.10 0.04 -0.01 0.02 0.02 0.00 0.03 0.01 ]
T [ -0.00 0.00 0.01 0.00 0.02 -0.01 -0.02 -0.03 -0.07 -0.02 -0.05 0.05 -0.03 -0.04 -0.06 0.02 -0.03 0.01 -0.02 -0.05 -0.01 0.02 -0.03 0.02 0.01 -0.01 -0.01 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_1

Num. of seqlets: 1128

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_3

Num. of seqlets: 438

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_4

Num. of seqlets: 64

CWM

PFM

     

HCWM

447 profiles found for the same TF (CTCF) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000001.1 CTCF ENCSR000AHD MCF-7 Homo sapiens MA0139.2
BP000002.1 CTCF ENCSR000AKB GM12878 Homo sapiens MA0139.2
BP000003.1 CTCF ENCSR000AKO K562 Homo sapiens MA0139.2
BP000004.1 CTCF ENCSR000ALA endothelial cell of umbilical vein Homo sapiens MA0139.2
BP000005.1 CTCF ENCSR000ALJ keratinocyte Homo sapiens MA0139.2
BP000006.1 CTCF ENCSR000ALV mammary epithelial cell Homo sapiens MA0139.2
BP000007.1 CTCF ENCSR000AMA HepG2 Homo sapiens MA0139.2
BP000008.1 CTCF ENCSR000AMF H1 Homo sapiens MA0139.2
BP000009.1 CTCF ENCSR000ANE skeletal muscle myoblast Homo sapiens MA0139.2
BP000010.1 CTCF ENCSR000ANO fibroblast of lung Homo sapiens MA0139.2
Showing 10 profiles of page 1 from 45 pages