Detailed information of deep learning profile BP000234.1

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This page shows detailed deep learning-derived predictions and motifs for CTCF in gastrocnemius medialis using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: CTCF
Model ID: BP000234.1
Cell line/tissue: gastrocnemius medialis
Class: C2H2 zinc finger factors
Family: More than 3 adjacent zinc fingers
JASPAR ID: MA0139.2
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: P49711  
Source: ENCSR355ALW
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ 0.01 -0.00 0.01 -0.00 -0.00 -0.00 -0.00 -0.00 0.01 -0.00 -0.00 -0.00 0.02 -0.00 -0.00 -0.00 -0.00 -0.00 -0.00 0.01 -0.00 ]
C [ 0.00 0.00 -0.00 0.01 0.04 -0.00 0.08 0.14 0.04 0.06 0.15 0.00 -0.00 0.01 0.01 -0.00 -0.00 0.02 0.01 -0.00 0.00 ]
G [ 0.00 0.00 0.01 0.02 -0.00 0.07 0.00 -0.00 -0.00 -0.00 -0.00 -0.00 0.01 0.05 -0.00 0.14 0.08 -0.00 0.00 0.01 0.00 ]
T [ -0.00 0.01 -0.00 -0.00 0.01 -0.00 -0.00 -0.00 -0.00 0.01 -0.00 0.07 -0.00 -0.00 0.02 -0.00 -0.00 0.00 -0.00 -0.00 -0.00 ]

Frequency matrix

       
A [ 4229 4128 4235 4994 4717 4403 4405 4521 3888 4625 4591 3737 3900 3465 5298 6245 2321 7438 2176 1174 1770 1583 191 5974 272 165 1215 6909 631 2840 196 1171 3419 4299 6780 4836 5540 4593 4371 4227 4717 4506 5452 7455 5610 3775 4257 4185 5108 5240 ]
C [ 4825 4932 4993 4352 4325 4886 5056 4858 4791 3304 3113 4544 4990 7444 4129 4985 5400 2320 5496 8526 1131 14657 17800 10408 11348 17853 1869 1602 6405 2931 207 1335 7740 6058 2851 4532 3811 4260 4444 4181 3398 3140 4279 4093 4511 4428 3535 5983 6098 4627 ]
G [ 4687 4608 4518 4302 4126 4261 4339 5019 4018 5771 6740 5895 4911 3478 3668 3844 4326 5787 8650 1614 12448 1380 116 703 238 68 564 7001 10058 1134 17220 14055 2202 3983 6071 4887 4331 4802 4965 5573 6399 7280 4459 3242 3738 3922 5703 4761 3517 4440 ]
T [ 4621 4694 4616 4714 5194 4812 4562 3964 5665 4662 3918 4186 4561 3975 5267 3288 6315 2817 2040 7048 3013 742 255 1277 6504 276 14714 2850 1268 11457 739 1801 5001 4022 2660 4107 4680 4707 4582 4381 3848 3436 4172 3572 4503 6237 4867 3433 3639 4055 ]

Hypothetical CWM

   
A [ -0.01 -0.01 0.01 0.02 -0.03 0.02 -0.01 -0.05 -0.02 0.01 -0.03 0.02 -0.06 -0.04 -0.03 0.05 -0.05 -0.02 -0.07 -0.03 -0.02 -0.01 0.02 0.00 0.01 0.00 -0.00 ]
C [ 0.01 0.03 0.00 0.02 0.02 -0.01 0.04 0.10 -0.02 0.10 0.14 0.08 0.11 0.15 0.02 -0.02 0.04 0.06 -0.03 -0.02 0.05 0.03 -0.00 0.01 0.01 0.01 0.01 ]
G [ 0.01 0.01 0.01 0.01 0.03 0.04 0.05 -0.02 0.10 -0.02 -0.04 -0.00 -0.06 -0.02 -0.01 0.04 0.10 -0.03 0.15 0.10 -0.01 0.03 0.04 0.02 0.01 0.01 0.02 ]
T [ 0.00 -0.00 0.01 -0.02 0.02 -0.02 -0.02 0.02 -0.01 -0.04 -0.04 -0.05 0.04 -0.04 0.08 -0.02 -0.02 0.03 -0.03 -0.01 0.02 -0.01 -0.02 0.00 0.00 0.00 -0.00 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_1

Num. of seqlets: 1128

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_3

Num. of seqlets: 438

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_4

Num. of seqlets: 64

CWM

PFM

     

HCWM

447 profiles found for the same TF (CTCF) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000021.1 CTCF ENCSR000BHV A549 Homo sapiens MA0139.2
BP000022.1 CTCF ENCSR000BHW A549 Homo sapiens MA0139.2
BP000023.1 CTCF ENCSR000BIE HepG2 Homo sapiens MA0139.2
BP000024.1 CTCF ENCSR000BLX SK-N-SH Homo sapiens MA0139.2
BP000025.1 CTCF ENCSR000BNH H1 Homo sapiens MA0139.2
BP000026.1 CTCF ENCSR000BNO T47D Homo sapiens MA0139.2
BP000027.1 CTCF ENCSR000BPJ K562 Homo sapiens MA0139.2
BP000028.1 CTCF ENCSR000BQE Ishikawa Homo sapiens MA0139.2
BP000029.1 CTCF ENCSR000BSE HCT116 Homo sapiens MA0139.2
BP000030.1 CTCF ENCSR000DKN H54 Homo sapiens MA0139.2
Showing 10 profiles of page 3 from 45 pages