Detailed information of deep learning profile BP000233.1

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This page shows detailed deep learning-derived predictions and motifs for CTCF in esophagus muscularis mucosa using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: CTCF
Model ID: BP000233.1
Cell line/tissue: esophagus muscularis mucosa
Class: C2H2 zinc finger factors
Family: More than 3 adjacent zinc fingers
JASPAR ID: MA0139.2
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: P49711  
Source: ENCSR353DFU
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ 0.01 -0.00 0.01 -0.00 -0.00 -0.00 -0.00 -0.00 0.01 -0.00 -0.00 -0.00 0.02 -0.00 -0.00 -0.00 -0.00 -0.00 -0.00 0.00 -0.00 ]
C [ 0.00 0.00 -0.00 0.01 0.05 -0.00 0.10 0.15 0.04 0.06 0.16 0.00 -0.00 0.01 0.01 -0.00 -0.00 0.02 0.01 -0.00 0.00 ]
G [ 0.00 0.00 0.01 0.03 -0.00 0.08 -0.00 -0.00 -0.00 0.00 -0.00 -0.00 0.02 0.06 -0.00 0.16 0.08 -0.00 0.00 0.01 0.00 ]
T [ -0.00 0.01 -0.00 -0.00 0.01 -0.00 -0.00 -0.00 -0.00 0.02 -0.00 0.07 -0.00 -0.00 0.03 -0.00 -0.00 0.00 -0.00 -0.00 -0.00 ]

Frequency matrix

       
A [ 4753 4580 4726 5860 5542 5172 5042 5160 4144 5437 5311 4131 4346 3877 6222 7393 2210 8755 2078 1099 1813 1667 262 7177 192 139 1219 7767 612 2721 162 1375 3864 4879 7888 5527 6387 5277 4882 4643 5594 5309 6225 8874 6630 4219 4876 4722 5802 6014 ]
C [ 5427 5496 5748 4696 4621 5320 5634 5509 5658 3328 3026 4935 5570 8715 4452 5457 5908 2296 6321 10098 852 17589 20007 11351 12080 20295 1784 1706 7122 3307 198 1453 8987 7017 3096 5231 4207 4642 4774 4637 3763 3329 4709 4592 4923 4895 3852 6840 7070 5282 ]
G [ 5245 5265 4957 4708 4492 4669 4820 5734 4150 6653 8146 6860 5738 3614 3907 4222 5130 6825 10336 1140 14938 950 146 914 213 77 621 7893 11801 895 19807 15880 2256 4246 6851 5220 4629 5396 5672 6492 7011 8188 5067 3392 4053 4416 6409 5356 3829 4903 ]
T [ 5339 5423 5333 5500 6109 5603 5268 4361 6812 5346 4281 4838 5110 4558 6183 3692 7516 2888 2029 8427 3161 558 349 1322 8279 253 17140 3398 1229 13841 597 2056 5657 4622 2929 4786 5541 5449 5436 4992 4396 3938 4763 3906 5158 7234 5627 3846 4063 4565 ]

Hypothetical CWM

   
A [ -0.01 -0.01 0.01 0.02 -0.03 0.03 -0.01 -0.05 -0.02 0.01 -0.04 0.02 -0.06 -0.03 -0.03 0.05 -0.05 -0.02 -0.07 -0.03 -0.02 -0.00 0.01 0.00 0.01 ]
C [ 0.01 0.03 -0.00 0.02 0.02 -0.01 0.04 0.11 -0.02 0.12 0.15 0.09 0.11 0.16 0.02 -0.01 0.05 0.07 -0.02 -0.02 0.05 0.03 -0.00 0.01 0.01 ]
G [ 0.02 0.00 0.01 0.01 0.03 0.04 0.06 -0.02 0.11 -0.02 -0.03 0.00 -0.05 -0.02 0.00 0.05 0.11 -0.02 0.16 0.11 -0.01 0.03 0.05 0.02 0.01 ]
T [ 0.00 -0.00 0.01 -0.02 0.03 -0.02 -0.02 0.02 -0.01 -0.04 -0.04 -0.05 0.05 -0.04 0.08 -0.01 -0.02 0.04 -0.02 -0.01 0.02 -0.01 -0.02 0.00 0.00 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_1

Num. of seqlets: 950

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_2

Num. of seqlets: 216

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_3

Num. of seqlets: 179

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_4

Num. of seqlets: 171

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_6

Num. of seqlets: 39

CWM

PFM

     

HCWM

447 profiles found for the same TF (CTCF) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000001.1 CTCF ENCSR000AHD MCF-7 Homo sapiens MA0139.2
BP000002.1 CTCF ENCSR000AKB GM12878 Homo sapiens MA0139.2
BP000003.1 CTCF ENCSR000AKO K562 Homo sapiens MA0139.2
BP000004.1 CTCF ENCSR000ALA endothelial cell of umbilical vein Homo sapiens MA0139.2
BP000005.1 CTCF ENCSR000ALJ keratinocyte Homo sapiens MA0139.2
BP000006.1 CTCF ENCSR000ALV mammary epithelial cell Homo sapiens MA0139.2
BP000007.1 CTCF ENCSR000AMA HepG2 Homo sapiens MA0139.2
BP000008.1 CTCF ENCSR000AMF H1 Homo sapiens MA0139.2
BP000009.1 CTCF ENCSR000ANE skeletal muscle myoblast Homo sapiens MA0139.2
BP000010.1 CTCF ENCSR000ANO fibroblast of lung Homo sapiens MA0139.2
Showing 10 profiles of page 1 from 45 pages