Detailed information of deep learning profile BP000233.1

This page shows detailed deep learning-derived predictions and motifs for CTCF in esophagus muscularis mucosa using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: CTCF
Model ID: BP000233.1
Cell line/tissue: esophagus muscularis mucosa
Class: C2H2 zinc finger factors
Family: More than 3 adjacent zinc fingers
JASPAR ID: MA0139.2
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: P49711  
Source: ENCSR353DFU
Model: BPNet
Download trained model
Download TF-MoDISco Report

Contribution weight matrix (CWM)

A [ -0.00 -0.00 -0.00 0.00 -0.00 -0.00 0.03 -0.00 -0.00 0.07 -0.00 0.02 -0.00 -0.00 -0.00 -0.00 0.01 -0.00 -0.00 0.01 -0.00 ]
C [ 0.00 0.01 0.00 -0.00 0.08 0.16 -0.00 0.06 0.02 -0.00 -0.00 0.00 -0.00 -0.00 -0.00 0.08 -0.00 0.03 0.01 0.00 0.00 ]
G [ 0.00 -0.00 0.01 0.02 -0.00 -0.00 0.01 0.01 -0.00 0.00 0.16 0.06 0.04 0.15 0.10 -0.00 0.05 0.01 -0.00 0.00 0.00 ]
T [ -0.00 0.00 -0.00 -0.00 -0.00 -0.00 -0.00 -0.00 0.02 -0.00 -0.00 -0.00 0.01 -0.00 -0.00 -0.00 -0.00 -0.00 0.01 -0.00 0.01 ]

Frequency matrix

A [ 4565 4063 3846 5627 7234 5158 3906 4763 3938 4396 4992 5436 5449 5541 4786 2929 4622 5657 2056 597 13841 1229 3398 17140 253 8279 1322 349 558 3161 8427 2029 2888 7516 3692 6183 4558 5110 4838 4281 5346 6812 4361 5268 5603 6109 5500 5333 5423 5339 ]
C [ 4903 3829 5356 6409 4416 4053 3392 5067 8188 7011 6492 5672 5396 4629 5220 6851 4246 2256 15880 19807 895 11801 7893 621 77 213 914 146 950 14938 1140 10336 6825 5130 4222 3907 3614 5738 6860 8146 6653 4150 5734 4820 4669 4492 4708 4957 5265 5245 ]
G [ 5282 7070 6840 3852 4895 4923 4592 4709 3329 3763 4637 4774 4642 4207 5231 3096 7017 8987 1453 198 3307 7122 1706 1784 20295 12080 11351 20007 17589 852 10098 6321 2296 5908 5457 4452 8715 5570 4935 3026 3328 5658 5509 5634 5320 4621 4696 5748 5496 5427 ]
T [ 6014 5802 4722 4876 4219 6630 8874 6225 5309 5594 4643 4882 5277 6387 5527 7888 4879 3864 1375 162 2721 612 7767 1219 139 192 7177 262 1667 1813 1099 2078 8755 2210 7393 6222 3877 4346 4131 5311 5437 4144 5160 5042 5172 5542 5860 4726 4580 4753 ]

Hypothetical CWM

A [ 0.00 0.00 -0.02 -0.01 0.02 -0.01 -0.02 0.04 -0.02 -0.01 0.08 -0.04 0.05 -0.05 -0.04 -0.04 -0.01 0.02 -0.02 -0.02 0.03 -0.02 0.01 -0.00 0.00 ]
C [ 0.01 0.02 0.05 0.03 -0.01 0.11 0.16 -0.02 0.11 0.05 0.00 -0.02 -0.05 0.00 -0.03 -0.02 0.11 -0.02 0.06 0.04 0.03 0.01 0.01 0.00 0.02 ]
G [ 0.01 0.01 -0.00 0.03 0.05 -0.02 -0.02 0.07 0.05 -0.01 0.02 0.16 0.11 0.09 0.15 0.12 -0.02 0.11 0.04 -0.01 0.02 0.02 -0.00 0.03 0.01 ]
T [ 0.01 0.00 0.01 -0.00 -0.02 -0.03 -0.07 -0.02 -0.05 0.05 -0.03 -0.03 -0.06 0.02 -0.04 0.01 -0.02 -0.05 -0.01 0.03 -0.03 0.02 0.01 -0.01 -0.01 ]

Other motifs identified by TF-MoDISco

Motif name: counts.pos_patterns.pattern_1

Num. of seqlets: 950

Motif name: counts.pos_patterns.pattern_2

Num. of seqlets: 216

Motif name: counts.pos_patterns.pattern_3

Num. of seqlets: 179

Motif name: counts.pos_patterns.pattern_4

Num. of seqlets: 171

Motif name: counts.pos_patterns.pattern_6

Num. of seqlets: 39

447 profiles found for the same TF (CTCF) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000041.1 CTCF ENCSR000DMA K562 Homo sapiens MA0139.2
BP000042.1 CTCF ENCSR000DMC kidney Homo sapiens MA0139.2
BP000043.1 CTCF ENCSR000DME LNCaP clone FGC Homo sapiens MA0139.2
BP000044.1 CTCF ENCSR000DMF LNCaP clone FGC Homo sapiens MA0139.2
BP000045.1 CTCF ENCSR000DMH lung Homo sapiens MA0139.2
BP000046.1 CTCF ENCSR000DML MCF-7 Homo sapiens MA0139.2
BP000047.1 CTCF ENCSR000DMO MCF-7 Homo sapiens MA0139.2
BP000048.1 CTCF ENCSR000DMR MCF-7 Homo sapiens MA0139.2
BP000049.1 CTCF ENCSR000DMS MCF-7 Homo sapiens MA0139.2
BP000050.1 CTCF ENCSR000DMV MCF-7 Homo sapiens MA0139.2
Showing 10 profiles of page 5 from 45 pages