Detailed information of deep learning profile BP000232.1

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This page shows detailed deep learning-derived predictions and motifs for CTCF in HCT116 using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: CTCF
Model ID: BP000232.1
Cell line/tissue: HCT116
Class: C2H2 zinc finger factors
Family: More than 3 adjacent zinc fingers
JASPAR ID: MA0139.2
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: P49711  
Source: ENCSR352EIC
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ -0.00 -0.00 -0.00 0.01 -0.00 -0.00 0.03 -0.00 -0.00 0.08 -0.00 0.01 -0.00 -0.00 -0.00 -0.00 0.00 -0.00 -0.00 0.01 ]
C [ 0.00 0.01 0.01 -0.00 0.12 0.18 -0.00 0.06 0.02 -0.00 -0.00 -0.00 -0.00 -0.00 0.00 0.05 0.00 0.02 0.01 0.00 ]
G [ -0.00 -0.00 0.01 0.02 -0.00 -0.00 0.00 0.01 -0.00 0.00 0.18 0.09 0.05 0.14 0.08 0.00 0.03 0.01 -0.00 0.00 ]
T [ 0.00 0.01 -0.00 -0.00 -0.00 -0.00 -0.01 -0.00 0.02 -0.00 -0.00 -0.00 0.00 -0.00 -0.00 -0.00 -0.00 -0.00 0.01 -0.00 ]

Frequency matrix

       
A [ 4061 3597 3241 4771 6414 4634 3178 4315 3001 3800 4362 4685 4278 4380 3721 2587 3736 5353 1533 678 11005 1432 2563 13667 229 4194 1990 809 1943 3795 5491 3092 3587 5336 3656 4777 4112 4591 4157 4337 4684 4836 4247 4410 4580 4506 4441 4522 4574 4478 ]
C [ 3777 2756 4182 5285 3581 3314 2676 4049 7763 6133 5325 4528 4439 3893 4884 5764 4182 1999 13683 15924 1101 9357 6685 336 93 145 963 820 2007 8765 2677 6596 4588 3678 3491 3354 3536 4222 4637 4863 4438 3829 4123 3966 3919 3963 4021 4054 4060 4194 ]
G [ 4047 5747 5929 2859 3679 3729 3350 3517 2325 2660 3561 3733 3480 3362 3770 2309 5239 6549 970 246 1685 5711 1153 1859 16572 12188 9860 14214 11070 1953 6686 4386 2844 4787 4405 4038 5589 4243 4426 3442 3721 4258 4276 4340 4272 4025 4010 4222 4260 4116 ]
T [ 5190 4975 3723 4160 3401 5398 7871 5194 3986 4482 3827 4129 4878 5440 4700 6415 3918 3174 889 227 3284 575 6674 1213 181 548 4262 1232 2055 2562 2221 3001 6056 3274 5523 4906 3838 4019 3855 4433 4232 4152 4429 4359 4304 4581 4603 4277 4181 4287 ]

Hypothetical CWM

   
A [ 0.01 0.00 0.00 -0.01 -0.03 -0.02 0.03 -0.01 -0.03 0.05 -0.02 -0.02 0.10 -0.07 0.02 -0.05 -0.06 -0.04 -0.01 0.01 -0.01 -0.01 0.02 -0.01 ]
C [ 0.02 0.01 0.01 0.02 0.05 0.04 -0.02 0.14 0.19 -0.03 0.11 0.05 -0.03 -0.03 -0.08 -0.01 -0.04 -0.03 0.08 -0.01 0.04 0.02 0.01 0.01 ]
G [ 0.00 0.01 -0.00 0.01 -0.01 0.04 0.05 -0.04 -0.04 0.06 0.05 -0.04 0.03 0.18 0.13 0.09 0.15 0.10 -0.01 0.08 0.03 -0.01 0.01 0.01 ]
T [ -0.00 0.01 0.02 0.01 0.03 -0.01 -0.02 -0.06 -0.09 -0.03 -0.07 0.06 -0.04 -0.05 -0.06 0.01 -0.04 -0.00 -0.02 -0.04 -0.01 0.02 -0.02 0.02 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_1

Num. of seqlets: 1307

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_2

Num. of seqlets: 488

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_4

Num. of seqlets: 100

CWM

PFM

     

HCWM

447 profiles found for the same TF (CTCF) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000001.1 CTCF ENCSR000AHD MCF-7 Homo sapiens MA0139.2
BP000002.1 CTCF ENCSR000AKB GM12878 Homo sapiens MA0139.2
BP000003.1 CTCF ENCSR000AKO K562 Homo sapiens MA0139.2
BP000004.1 CTCF ENCSR000ALA endothelial cell of umbilical vein Homo sapiens MA0139.2
BP000005.1 CTCF ENCSR000ALJ keratinocyte Homo sapiens MA0139.2
BP000006.1 CTCF ENCSR000ALV mammary epithelial cell Homo sapiens MA0139.2
BP000007.1 CTCF ENCSR000AMA HepG2 Homo sapiens MA0139.2
BP000008.1 CTCF ENCSR000AMF H1 Homo sapiens MA0139.2
BP000009.1 CTCF ENCSR000ANE skeletal muscle myoblast Homo sapiens MA0139.2
BP000010.1 CTCF ENCSR000ANO fibroblast of lung Homo sapiens MA0139.2
Showing 10 profiles of page 1 from 45 pages