Detailed information of deep learning profile BP000232.1

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This page shows detailed deep learning-derived predictions and motifs for CTCF in HCT116 using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: CTCF
Model ID: BP000232.1
Cell line/tissue: HCT116
Class: C2H2 zinc finger factors
Family: More than 3 adjacent zinc fingers
JASPAR ID: MA0139.2
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: P49711  
Source: ENCSR352EIC
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ -0.00 0.01 -0.00 -0.00 -0.00 -0.00 -0.00 0.00 -0.00 -0.00 -0.00 0.02 -0.00 -0.01 -0.00 -0.00 -0.00 -0.00 0.01 0.00 ]
C [ 0.00 -0.00 0.01 0.03 0.00 0.08 0.14 0.05 0.09 0.18 0.00 -0.00 0.01 0.00 -0.00 -0.00 0.02 0.01 -0.00 -0.00 ]
G [ 0.00 0.01 0.02 0.00 0.05 0.00 -0.00 -0.00 -0.00 -0.00 -0.00 0.02 0.06 -0.00 0.18 0.12 -0.00 0.01 0.01 0.00 ]
T [ 0.01 -0.00 -0.00 0.00 -0.00 -0.00 -0.00 -0.00 0.01 -0.00 0.08 -0.00 -0.00 0.03 -0.00 -0.00 0.01 -0.00 -0.00 -0.00 ]

Frequency matrix

       
A [ 4287 4181 4277 4603 4581 4304 4359 4429 4152 4232 4433 3855 4019 3838 4906 5523 3274 6056 3001 2221 2562 2055 1232 4262 548 181 1213 6674 575 3284 227 889 3174 3918 6415 4700 5440 4878 4129 3827 4482 3986 5194 7871 5398 3401 4160 3723 4975 5190 ]
C [ 4116 4260 4222 4010 4025 4272 4340 4276 4258 3721 3442 4426 4243 5589 4038 4405 4787 2844 4386 6686 1953 11070 14214 9860 12188 16572 1859 1153 5711 1685 246 970 6549 5239 2309 3770 3362 3480 3733 3561 2660 2325 3517 3350 3729 3679 2859 5929 5747 4047 ]
G [ 4194 4060 4054 4021 3963 3919 3966 4123 3829 4438 4863 4637 4222 3536 3354 3491 3678 4588 6596 2677 8765 2007 820 963 145 93 336 6685 9357 1101 15924 13683 1999 4182 5764 4884 3893 4439 4528 5325 6133 7763 4049 2676 3314 3581 5285 4182 2756 3777 ]
T [ 4478 4574 4522 4441 4506 4580 4410 4247 4836 4684 4337 4157 4591 4112 4777 3656 5336 3587 3092 5491 3795 1943 809 1990 4194 229 13667 2563 1432 11005 678 1533 5353 3736 2587 3721 4380 4278 4685 4362 3800 3001 4315 3178 4634 6414 4771 3241 3597 4061 ]

Hypothetical CWM

   
A [ 0.02 -0.02 0.02 -0.01 -0.04 -0.02 -0.00 -0.04 0.01 -0.06 -0.05 -0.04 0.06 -0.07 -0.03 -0.09 -0.06 -0.02 -0.01 0.03 0.01 0.02 0.01 -0.00 ]
C [ 0.01 0.01 -0.01 0.03 0.08 -0.01 0.10 0.15 0.09 0.13 0.18 0.03 -0.04 0.05 0.06 -0.04 -0.04 0.05 0.04 -0.01 0.01 -0.00 0.01 0.00 ]
G [ 0.01 0.01 0.02 0.04 -0.01 0.08 -0.03 -0.04 -0.01 -0.08 -0.03 -0.03 0.05 0.11 -0.03 0.19 0.14 -0.02 0.04 0.05 0.02 0.01 0.01 0.02 ]
T [ -0.01 0.02 -0.01 -0.01 0.01 -0.01 -0.04 -0.06 -0.05 0.02 -0.07 0.10 -0.02 -0.02 0.05 -0.03 -0.01 0.03 -0.02 -0.03 -0.01 0.00 0.00 0.01 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_1

Num. of seqlets: 1307

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_2

Num. of seqlets: 488

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_4

Num. of seqlets: 100

CWM

PFM

     

HCWM

447 profiles found for the same TF (CTCF) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000001.1 CTCF ENCSR000AHD MCF-7 Homo sapiens MA0139.2
BP000002.1 CTCF ENCSR000AKB GM12878 Homo sapiens MA0139.2
BP000003.1 CTCF ENCSR000AKO K562 Homo sapiens MA0139.2
BP000004.1 CTCF ENCSR000ALA endothelial cell of umbilical vein Homo sapiens MA0139.2
BP000005.1 CTCF ENCSR000ALJ keratinocyte Homo sapiens MA0139.2
BP000006.1 CTCF ENCSR000ALV mammary epithelial cell Homo sapiens MA0139.2
BP000007.1 CTCF ENCSR000AMA HepG2 Homo sapiens MA0139.2
BP000008.1 CTCF ENCSR000AMF H1 Homo sapiens MA0139.2
BP000009.1 CTCF ENCSR000ANE skeletal muscle myoblast Homo sapiens MA0139.2
BP000010.1 CTCF ENCSR000ANO fibroblast of lung Homo sapiens MA0139.2
Showing 10 profiles of page 1 from 45 pages