Detailed information of deep learning profile BP000231.1

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This page shows detailed deep learning-derived predictions and motifs for CTCF in middle frontal area 46 using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: CTCF
Model ID: BP000231.1
Cell line/tissue: middle frontal area 46
Class: C2H2 zinc finger factors
Family: More than 3 adjacent zinc fingers
JASPAR ID: MA0139.2
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: P49711  
Source: ENCSR351SWL
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ 0.01 -0.00 0.01 -0.00 -0.00 -0.00 -0.00 -0.00 0.01 -0.00 -0.00 -0.00 0.02 -0.00 -0.01 -0.00 -0.00 -0.01 -0.00 0.01 0.00 ]
C [ 0.00 0.01 -0.00 0.02 0.06 -0.00 0.13 0.18 0.06 0.07 0.19 0.00 -0.00 0.01 0.01 -0.00 -0.00 0.02 0.01 -0.00 0.00 ]
G [ 0.00 0.01 0.01 0.03 -0.00 0.11 -0.00 0.00 0.00 0.00 -0.00 -0.00 0.02 0.07 -0.00 0.18 0.09 -0.00 0.01 0.01 0.00 ]
T [ -0.00 0.01 -0.00 -0.00 0.01 -0.00 -0.00 -0.00 -0.00 0.02 -0.00 0.08 -0.01 -0.00 0.03 -0.00 -0.00 0.00 -0.01 -0.00 -0.00 ]

Frequency matrix

       
A [ 4808 4686 4872 5848 5527 5187 5113 5130 4297 5499 5292 4129 4494 3823 6492 7646 2228 8964 2127 1049 1781 1755 221 7375 182 153 1368 8191 728 2777 261 1575 3879 5025 7979 5661 6387 5268 5000 4846 5614 5336 6321 8733 6814 4537 5047 4921 5909 6037 ]
C [ 5496 5496 5769 4669 4562 5263 5627 5630 5616 3215 2988 5019 5484 8784 4447 5481 5922 2114 6218 10241 682 17940 20324 11541 12029 20392 1901 1693 7099 3331 304 1626 9016 6950 3331 5339 4311 4771 4906 4608 3895 3466 4823 4674 4881 4912 3970 6715 7003 5315 ]
G [ 5285 5284 4899 4738 4619 4780 4852 5774 4159 6791 8238 6872 5646 3662 3830 4188 5090 7020 10664 958 15466 791 86 893 177 100 674 7539 11690 1044 19646 15530 2347 4305 6564 5093 4668 5429 5748 6369 7006 8086 5088 3504 4051 4312 6230 5312 3831 4899 ]
T [ 5355 5478 5404 5689 6236 5714 5352 4410 6872 5439 4426 4924 5320 4675 6175 3629 7704 2846 1935 8696 3015 458 313 1135 8556 299 17001 3521 1427 13792 733 2213 5702 4664 3070 4851 5578 5476 5290 5121 4429 4056 4712 4033 5198 7183 5697 3996 4201 4693 ]

Hypothetical CWM

   
A [ -0.01 -0.01 0.01 0.03 -0.04 0.03 -0.01 -0.07 -0.03 0.01 -0.04 0.03 -0.09 -0.05 -0.03 0.06 -0.05 -0.03 -0.07 -0.03 -0.01 -0.00 0.02 0.01 0.01 0.00 ]
C [ 0.02 0.05 0.00 0.02 0.03 0.00 0.06 0.15 -0.03 0.15 0.18 0.11 0.14 0.19 0.03 -0.01 0.06 0.09 -0.02 -0.02 0.06 0.05 0.01 0.02 0.01 0.02 ]
G [ 0.02 0.01 0.01 0.02 0.04 0.06 0.07 -0.02 0.15 -0.02 -0.04 0.02 -0.06 -0.02 0.01 0.06 0.13 -0.02 0.19 0.12 -0.01 0.04 0.06 0.03 0.01 0.02 ]
T [ 0.00 -0.00 0.02 -0.02 0.03 -0.02 -0.03 0.03 -0.01 -0.06 -0.05 -0.07 0.06 -0.04 0.09 -0.01 -0.03 0.04 -0.03 -0.01 0.02 -0.02 -0.02 0.00 0.00 0.01 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_1

Num. of seqlets: 830

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_3

Num. of seqlets: 439

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_4

Num. of seqlets: 314

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_5

Num. of seqlets: 275

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_6

Num. of seqlets: 215

CWM

PFM

     

HCWM

447 profiles found for the same TF (CTCF) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000001.1 CTCF ENCSR000AHD MCF-7 Homo sapiens MA0139.2
BP000002.1 CTCF ENCSR000AKB GM12878 Homo sapiens MA0139.2
BP000003.1 CTCF ENCSR000AKO K562 Homo sapiens MA0139.2
BP000004.1 CTCF ENCSR000ALA endothelial cell of umbilical vein Homo sapiens MA0139.2
BP000005.1 CTCF ENCSR000ALJ keratinocyte Homo sapiens MA0139.2
BP000006.1 CTCF ENCSR000ALV mammary epithelial cell Homo sapiens MA0139.2
BP000007.1 CTCF ENCSR000AMA HepG2 Homo sapiens MA0139.2
BP000008.1 CTCF ENCSR000AMF H1 Homo sapiens MA0139.2
BP000009.1 CTCF ENCSR000ANE skeletal muscle myoblast Homo sapiens MA0139.2
BP000010.1 CTCF ENCSR000ANO fibroblast of lung Homo sapiens MA0139.2
Showing 10 profiles of page 1 from 45 pages