Detailed information of deep learning profile BP000229.1

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This page shows detailed deep learning-derived predictions and motifs for CTCF in activated CD8-positive and alpha-beta T cell using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: CTCF
Model ID: BP000229.1
Cell line/tissue: activated CD8-positive and alpha-beta T cell
Class: C2H2 zinc finger factors
Family: More than 3 adjacent zinc fingers
JASPAR ID: MA0139.2
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: P49711  
Source: ENCSR347MXL
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ -0.00 -0.00 -0.00 0.00 -0.00 -0.00 0.02 -0.00 -0.00 0.06 -0.00 0.01 -0.00 -0.00 -0.00 -0.00 0.01 -0.00 -0.00 0.01 -0.00 ]
C [ 0.00 0.01 0.01 -0.00 0.08 0.14 -0.00 0.05 0.01 -0.00 -0.00 -0.00 -0.00 -0.00 0.00 0.07 0.00 0.03 0.01 0.00 -0.00 ]
G [ 0.00 -0.00 0.01 0.02 -0.00 -0.00 0.00 0.01 -0.00 0.00 0.14 0.06 0.05 0.14 0.09 -0.00 0.04 0.01 -0.00 0.00 0.00 ]
T [ 0.00 0.01 -0.00 -0.00 -0.00 -0.00 -0.00 -0.00 0.02 -0.00 -0.00 -0.00 0.00 -0.00 -0.00 -0.00 -0.00 -0.00 0.01 -0.00 0.01 ]

Frequency matrix

       
A [ 3410 2972 2824 4075 5365 3761 2757 3559 2855 3074 3582 3758 3908 3896 3450 2312 3370 4213 1575 511 9390 1212 2437 12170 224 5224 1031 243 576 2428 5615 1690 2402 5200 2874 4338 3301 3923 3472 3311 3922 4554 3320 3781 4017 4116 3966 3913 3869 3804 ]
C [ 3686 2708 3815 4801 3175 3011 2544 3723 6204 5238 4679 4351 4035 3655 3951 5002 3415 1773 11463 14288 1099 8162 5830 462 91 173 615 132 1094 10304 1280 7705 4774 3553 3080 3008 2904 4018 4647 5454 4646 3402 4097 3652 3559 3588 3654 3690 3869 3901 ]
G [ 3832 5254 5133 2857 3611 3704 3409 3569 2561 2827 3508 3576 3467 3243 3828 2450 4892 6522 1154 243 2204 5278 1321 1547 14780 9659 8865 14646 12315 949 7305 4076 1752 4508 4025 3474 6247 4048 4109 2644 2791 4058 4068 4152 4052 3566 3679 4161 4078 4049 ]
T [ 4300 4294 3456 3495 3077 4752 6518 4377 3608 4089 3459 3543 3818 4434 3999 5464 3551 2720 1036 186 2535 576 5640 1049 133 172 4717 207 1243 1547 1028 1757 6300 1967 5249 4408 2776 3239 3000 3819 3869 3214 3743 3643 3600 3958 3929 3464 3412 3474 ]

Hypothetical CWM

   
A [ 0.00 0.00 0.00 -0.02 -0.02 0.02 -0.01 -0.03 0.03 -0.02 -0.02 0.08 -0.05 0.04 -0.05 -0.04 -0.04 -0.01 0.02 -0.02 -0.01 0.02 -0.01 0.01 -0.00 0.00 ]
C [ 0.01 0.01 0.01 0.04 0.03 -0.01 0.10 0.15 -0.02 0.10 0.04 -0.01 -0.02 -0.05 -0.00 -0.03 -0.03 0.10 -0.02 0.05 0.03 0.02 0.01 0.00 0.00 0.01 ]
G [ 0.01 0.00 0.01 -0.00 0.03 0.04 -0.02 -0.02 0.06 0.04 -0.02 0.02 0.15 0.11 0.08 0.14 0.11 -0.02 0.10 0.03 -0.01 0.02 0.01 -0.00 0.03 0.01 ]
T [ 0.00 0.01 0.01 0.02 -0.00 -0.01 -0.03 -0.06 -0.02 -0.05 0.05 -0.03 -0.04 -0.06 0.02 -0.04 0.00 -0.02 -0.05 -0.01 0.03 -0.03 0.02 0.01 -0.00 -0.00 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_2

Num. of seqlets: 492

CWM

PFM

     

HCWM

447 profiles found for the same TF (CTCF) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000001.1 CTCF ENCSR000AHD MCF-7 Homo sapiens MA0139.2
BP000002.1 CTCF ENCSR000AKB GM12878 Homo sapiens MA0139.2
BP000003.1 CTCF ENCSR000AKO K562 Homo sapiens MA0139.2
BP000004.1 CTCF ENCSR000ALA endothelial cell of umbilical vein Homo sapiens MA0139.2
BP000005.1 CTCF ENCSR000ALJ keratinocyte Homo sapiens MA0139.2
BP000006.1 CTCF ENCSR000ALV mammary epithelial cell Homo sapiens MA0139.2
BP000007.1 CTCF ENCSR000AMA HepG2 Homo sapiens MA0139.2
BP000008.1 CTCF ENCSR000AMF H1 Homo sapiens MA0139.2
BP000009.1 CTCF ENCSR000ANE skeletal muscle myoblast Homo sapiens MA0139.2
BP000010.1 CTCF ENCSR000ANO fibroblast of lung Homo sapiens MA0139.2
Showing 10 profiles of page 1 from 45 pages